Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00577 ATGGCTCATATTGCTGTGGAAAGAAATAGGAGAAGGCAAATGAATGAACATCTTAGGGTTTTGAGATCTTTGACTCCTTGTTTCTATATCAAAAGGGGAGATCAAGCCTCGATTATTGGGGGAGTCATAGAGTTTATCAAGGAGTTGCATCAAGTTTTACAATCGTTGGAGTCCAACAAACGGAGGAGGAAGAGTATAAGCCCTAGCCCTGGTCCGAGCCCGAGGCCGCAATCAATGGCGGGATCCAATAATGGCTCGCTTGGATTTGAAAATGGAGTTGATGTCGTCGGAGCATGTTGCAATTCATCGGTCGCAGATGTCGAAGCGAAGATTTCGGGTTCAAACGTGGTTTTGAAGATCATTTCCCGCCGGATTCCTGGTCAACTTTCGAAGATGATTGGTGTCTTCGAGAGGCTCTCCTTTGAGGTTCTTCATCTCAACATTAGTAGTATGGATGACACAGTTCTGTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAACTAAGTTTGGAGGAACTAGCTTATGAAGTTCAACAAAGCTTCTGCTCTCAAGTGTATTTATGCCAATGA 573 43.8 MAHIAVERNRRRQMNEHLRVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSISPSPGPSPRPQSMAGSNNGSLGFENGVDVVGACCNSSVADVEAKISGSNVVLKIISRRIPGQLSKMIGVFERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAYEVQQSFCSQVYLCQ 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5276215 5277868 + ClCG05G005410.1 Cla05g00577 272067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00577 190 SMART finulus 4 55 IPR011598 GO:0046983
Cla05g00577 190 MobiDBLite consensus disorder prediction 59 83 - -
Cla05g00577 190 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Cla05g00577 190 PANTHER TRANSCRIPTION FACTOR MUTE 1 187 - -
Cla05g00577 190 CDD bHLH_AtFAMA_like 1 64 - -
Cla05g00577 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 63 IPR036638 GO:0046983
Cla05g00577 190 PANTHER TRANSCRIPTION FACTOR FAMA 1 187 IPR044283 GO:0003700|GO:0010052
Cla05g00577 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Cla05g00577 190 Gene3D - 1 66 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00577 Cla-Chr5:5276215 Cla08g01134 Cla-Chr8:24069718 8.81E-41 dispersed
Cla05g00577 Cla-Chr5:5276215 Cla02g01570 Cla-Chr2:30378559 1.07E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61022 PF00010 HLH 1.00E-07 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00577 - - csv:101203445 322.783