Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g00579 | ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCCCCGCCTCCTCCTCCTCCCTACCTTTCTTCTTCCTCTTTCTATTACCCCTCTGAACCTCAATCTCTTTCTCCTACTCCACCTCCGCCGCTGCAGACCCATCAGTTCACCAATTCCCACCCTCCTCCCCCGCACAGCCACCCTTACGGTCCAACTTCTCAGCCGCCACCTCTGCCGCCGATTCCTCATCCCCCTGCCCCTGCCCCCGCTCCTCACCCTTATTACTTCTCCGGTGGGTACAATTCGTGTAATTATGGAAATTCTTCGATGGGGCGTTTCAATTTTCACCCTTATTATGCTAATCAGAGTAATGGGTGGTCCCAAATTCGGCCGGCCATGGGTCCGCCGTTGCTTCCGCCACCGTCCTTGCCGTTTGTGGAGCATCGGCAAGCAAAGAAGGTTAGAAATGATGTGAATGTACATAAGGATACTTTAAGGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGCGTAACCATTCTATTTTTTGCCAAGGAGGAACCCAACTGTAGGTTCGTTCCAGTATATCCTGATGCCTTTAAGCCAGTCAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTAGGGTTTTTCGAGTTGGAGGACCTCTCAAAACCATCACCTGGAGAAGACATTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCAATCTGATGAAGAACAAATTGGTGAGCCTCAGCGAGATAATTCACACATGCAAATCACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCTTTTCCAGGTTAGAGTGATTAGGCAACTACTATGGATTGATGGAGTGAGATATGAGTTGCGTGAAATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCTGTATTACCATGCCGACATTTGTGCATGTGCAGTGATTGTGCCAAGGAACTGAGGCTTCAATCTAATAAATGTCCTATCTGTCGTCAACCGATTGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCAGTGA | 1182 | 46.36 | MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPQSLSPTPPPPLQTHQFTNSHPPPPHSHPYGPTSQPPPLPPIPHPPAPAPAPHPYYFSGGYNSCNYGNSSMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDHHLVSFVFDALYDGSVTILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFELEDLSKPSPGEDIFPLVISAETCSPSQSDEEQIGEPQRDNSHMQITQAVLEKKNGGLFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELIEIKINNSDQ | 393 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 5302386 | 5306885 | - | ClCG05G005430.1 | Cla05g00579 | 272069 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g00579 | 393 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
| Cla05g00579 | 393 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 387 | IPR013083 | - | |
| Cla05g00579 | 393 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 337 | 377 | IPR045195 | - | |
| Cla05g00579 | 393 | ProSiteProfiles | Zinc finger RING-type profile. | 338 | 377 | IPR001841 | - | |
| Cla05g00579 | 393 | SMART | ring_2 | 338 | 376 | IPR001841 | - | |
| Cla05g00579 | 393 | PANTHER | MAHOGUNIN | 1 | 392 | IPR045194 | GO:0061630 | |
| Cla05g00579 | 393 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED | 1 | 392 | - | - | |
| Cla05g00579 | 393 | MobiDBLite | consensus disorder prediction | 38 | 83 | - | - | |
| Cla05g00579 | 393 | SUPERFAMILY | RING/U-box | 337 | 383 | - | - | |
| Cla05g00579 | 393 | Pfam | Zinc finger, C3HC4 type (RING finger) | 336 | 382 | - | - | |
| Cla05g00579 | 393 | MobiDBLite | consensus disorder prediction | 14 | 28 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00579 | Cla-Chr5:5302386 | Cla10g01934 | Cla-Chr10:35187905 | 4.50E-13 | dispersed | |
| Cla05g00579 | Cla-Chr5:5302386 | Cla05g00442 | Cla-Chr5:3947041 | 1.07E-07 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g00579 | - | - | csv:101203938 | 681.019 |