Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00583 ATGAGTATATTAACTACTCGGTACTATAAATTTTTCAATATAAAAATCTATATGGGTACTGTTCTTGAATTGTATTGGTATTTGATGAAGATGGCATTATCATTATCCTCTGCCGCCGGGAAGCAAGTCCAGCCACTGGTGGGGAATTTTCAGGGGAGTTTCAACATGGAACAGTTTTTCCGGCGGAAAGAGAAAGTGGTTGTGGTAATGGGAGCTACCGGAACGGGTAAATCCCGGTTAGCGATCGATTTAGCTACTCGATTTCCTGCAGAAATTGTGAATTCCGACAAGATTCAAGTTTACGAAGGACTTGATGTTGTAACAAATAAAGTTACGGATGAAGAACGCCGTGGAATTTCCCACCATTTGTTAGGTTCGATTGACCCAAATTCAAATTTCTCTTCTCATGATTTTACTCATCATGCCTCTGTTGCAATTGAATCAATTTTGGCTAGAGATCGTCTCCCAATCATCGCTGGTGGATCCAATTCCTACATTGAAGCTCTGGTTGATGATTATGCAGAGTCCCGGTTCCGATATGAATTCTGTTTTTTATGGGTTGACGTTTCTTTACCGATTCTTCAGAAATTTGTCTCCGATCGTGTTGATCGGATGGTCGACGGTGGGTTTGTTGGAGAAGTGAGGCAGATTTTTGATCCGGAGGGGGATTATTCTCGTGGGATTAAACGAGCAATTGGAGTGCCGGAATTACACGATTATTTGAGGGCAGAACGCGACGGTGCCGATGAGAGGATTTTAACGATTCTTCTGGAATTGGCGATTTCGAAGATTAAAGACAATACTTGTCGCTTGGCACTCCGGCAACTGGAAAAGATTCGCCGCCTTCGGAATAAATGGAATTGGAATCTCCGGCGACTTGATGCCACCGGAGCGTTTTTGACTGACGGTGGAAACTCAGATGACGCATGGCAAAAACTTGTCCTTGAACCGAGCTCGAGGATTGTCGACCAATTCCTCTGCGACGATAGCCGCCGTATCACCACCGCTATTGCCACTCCGGAGCCGGTCCCCCGCGCCGTCGCCGCCGTAAGTCGTTAA 1059 45.42 MSILTTRYYKFFNIKIYMGTVLELYWYLMKMALSLSSAAGKQVQPLVGNFQGSFNMEQFFRRKEKVVVVMGATGTGKSRLAIDLATRFPAEIVNSDKIQVYEGLDVVTNKVTDEERRGISHHLLGSIDPNSNFSSHDFTHHASVAIESILARDRLPIIAGGSNSYIEALVDDYAESRFRYEFCFLWVDVSLPILQKFVSDRVDRMVDGGFVGEVRQIFDPEGDYSRGIKRAIGVPELHDYLRAERDGADERILTILLELAISKIKDNTCRLALRQLEKIRRLRNKWNWNLRRLDATGAFLTDGGNSDDAWQKLVLEPSSRIVDQFLCDDSRRITTAIATPEPVPRAVAAVSR 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5341795 5344319 - ClCG05G005465.1 Cla05g00583 272073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00583 352 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 52 332 IPR039657 -
Cla05g00583 352 Gene3D - 63 326 IPR027417 -
Cla05g00583 352 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 191 290 - -
Cla05g00583 352 Hamap tRNA dimethylallyltransferase [miaA]. 66 323 IPR018022 GO:0008033
Cla05g00583 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 221 IPR027417 -
Cla05g00583 352 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 52 332 - -
Cla05g00583 352 Pfam IPP transferase 99 173 - -
Cla05g00583 352 Pfam IPP transferase 179 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00583 K10760 IPT; adenylate dimethylallyltransferase (cytokinin synthase) [EC:2.5.1.27 2.5.1.112] - csv:101204427 567.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00583 Cla06g00544 CCT
Cla05g00583 Cla06g00544 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01243 Cla-Chr1:24960605 Cla05g00583 Cla-Chr5:5341795 1.05E-22 dispersed
Cla05g00583 Cla-Chr5:5341795 Cla07g00022 Cla-Chr7:266242 1.95E-93 dispersed
Cla02g00547 Cla-Chr2:5750011 Cla05g00583 Cla-Chr5:5341795 1.06E-97 transposed
Cla05g00583 Cla-Chr5:5341795 Cla06g00544 Cla-Chr6:6572407 1.09E-132 wgd
Cla05g00583 Cla-Chr5:5341795 Cla09g00636 Cla-Chr9:6008726 6.36E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g427 . . . . . Bpe14g01324 . . Cmo08g01143 Cmo17g00259 Cma06g01439 Cma14g01673 Car06g01241 Car14g01507 Sed02g1277 Cpe08g00236 Cpe03g01412 Bhi01g00864 Tan10g0896 Cmetu11g1902 Lac12g2331 . . Lcy11g1500 Cla06g00544 Cam06g0587 Cec06g0584 Cco06g0592 Clacu06g0574 Cmu06g0568 Cre06g1334 . . Cone7ag0211 Cone4ag0202 Lsi05g01461 . Chy11g01432 Cme06g00651 . Blo07g00204 . . . . . Bma06g01537 . Cmo06g01441 . Cma08g01170 Cma17g00272 Car08g01048 Car17g00247 Cpe12g00225 Cpe17g00124 Bhi12g01797 . . . . . . Cla05g00583 Cam05g0641 Cec05g0650 Cco05g0645 Clacu05g0635 Cmu05g0603 Cre05g0672 Lsi09g01358 Csa03g01377 Chy06g00620 Cme11g01937
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002613 0 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 0 2 2 2 2 2 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00583 Cla_Chr05 FPKM 6.776215 6.457277 16.567171 14.892335 7.97471 10.354827 8.449553 0.195424 0.107724 0.091855