Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00584 ATGTCAGGCCCCCAGTGCTGCTCAAATCCACCAACAACAAACCCCAGCAGCGGCGCCGGCCATCTCGAACAACTCGCCGGCCTCAACAGCTACATCACCGGCTCACCTGACTCCAAAATTGCCGTCATTCTTATTACTGATGTCTTCGGATATGAAGCCCCACTTCTAAGGAAGCTGGCAGATGAGGTTGCAGCTGCTGGGTTCTTTGTGGTTGTCCCTGATTTCTTCAAGGGAGATCCATATGTTCCAGATGATGCTAATAGGCCAATTCGAGTTTGGTTTCAAGATCATGAACCTGACAAGTCTTTCGATGATGGGAAGGCAGTTATTGAAGCTCTGAAAAGCAAAGGTATTTCAGCAATTGGAGCTGCAGGCTTTTGCTGGGGTGCCAAGGTTGTGGTTGAGCTTTCAAAGGTGGATTTGATTCAAGCTGCTGTGTTGCTACATCCATCGTTGGTTACTGTTGATGATATCAAAGAAATATTTCCATTTTGGAATATGAAAGTAAAGGAAGGCTGCATCAAATACACCGAATCAGACAAGAAAGAAGAATCTCACATTAACCGGCTTTTTCTTATTAGTTGTAGGATCATTATAAAGATTATTTTTCTACTTTTATCGGAAGCAACCACGGTTAAAGCTCCCACTTCGATACTAGGAGCCGAGATCGACCAAATATCTCCACCAGAACTCTTGAAACAGTTTGAAGAAGTCTTATCCACAAAGCCTGAGGTCGATGGATTCGTAAAGATCTTTCCAAAGGTTTCGCATGGATGGACGGTGAGGTACAATGTTGAAGATGAAGAAGCTGTGAAACGTGCAGATGAGGCTCAAAGGGACATGTTGGATTGGTTTACAAAGTACCTTAAGTAG 873 44.1 MSGPQCCSNPPTTNPSSGAGHLEQLAGLNSYITGSPDSKIAVILITDVFGYEAPLLRKLADEVAAAGFFVVVPDFFKGDPYVPDDANRPIRVWFQDHEPDKSFDDGKAVIEALKSKGISAIGAAGFCWGAKVVVELSKVDLIQAAVLLHPSLVTVDDIKEIFPFWNMKVKEGCIKYTESDKKEESHINRLFLISCRIIIKIIFLLLSEATTVKAPTSILGAEIDQISPPELLKQFEEVLSTKPEVDGFVKIFPKVSHGWTVRYNVEDEEAVKRADEAQRDMLDWFTKYLK 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5357068 5360450 + ClCG05G005470.2 Cla05g00584 272074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00584 290 PANTHER ENDO-1,3-1,4-BETA-D-GLUCANASE-LIKE PROTEIN 189 290 - -
Cla05g00584 290 PANTHER ENDO-1,3-1,4-BETA-D-GLUCANASE-LIKE PROTEIN 1 161 - -
Cla05g00584 290 Pfam Dienelactone hydrolase family 31 152 IPR002925 GO:0016787
Cla05g00584 290 Pfam Dienelactone hydrolase family 206 288 IPR002925 GO:0016787
Cla05g00584 290 MobiDBLite consensus disorder prediction 1 20 - -
Cla05g00584 290 PANTHER DIENELACTONE HYDROLASE 189 290 - -
Cla05g00584 290 PANTHER DIENELACTONE HYDROLASE 1 161 - -
Cla05g00584 290 SUPERFAMILY alpha/beta-Hydrolases 36 290 IPR029058 -
Cla05g00584 290 Gene3D alpha/beta hydrolase 28 288 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00584 - - - csv:101211476 387.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00584 Cla-Chr5:5357068 Cla05g00585 Cla-Chr5:5362678 2.17E-137 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g419 . . . . . . . . . . Cma06g01440 . Car06g01242 . . Cpe08g00235 . Bhi01g00866 Tan10g0900 Cmetu09g0387 . Hepe05g1515 . Lcy11g1494 . . . . . . . Cone14ag0814 Cone15ag0812 . Cone4ag0199 Lsi05g01462 . . Cme06g00652 . . . . . . . . . Cmo06g01442 . . . . . . . . . . . . . . Cla05g00584 Cam05g0642 Cec05g0651 Cco05g0646 Clacu05g0636 Cmu05g0604 Cre05g0673 . Csa03g01379 Chy06g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002887 1 2 1 1 0 2 1 2 2 1 2 2 1 2 1 1 2 2 1 2 1 4 1 4 3 2 1 2 2 5 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00584 Cla_Chr05 FPKM 8.034564 8.161695 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0