Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00593 ATGGGTTGTGTTCTTGGAAAGTGTTGCACTTCCAGTCGTTACCAGCCGTCTTCCGACGGCGATATCACCCAATTTGGTGATGCCCCGCCGTGTAGTTTACATGGAAAACATATACTAACCGGAAGGTCATTGGAGTCTGTTCGTGTGCCTTCTCACAACTACAATTTGGAGTATTCGCTTCTGACCCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGAAAACCAAGATAGTTTCTGTGTTAGTACACAAATTCGAGGTAACCCGAATATCCACATCTTTGGTGTTTTTGATGGTCATGGTCAATTTGGAATGCAGTGTTCGAATTTCGTTAAGGATAGGGTTGTGCAGCTATTGTGTAATGATTCAAAATTGTTGGAAGATCCTGTTAAAGCTTATAATTCGGCATTTTTGACTGCGAATGATGAATTGCATAATAGTGAGATTGATGATTCCATGAGTGGTACAACAGCTATTACTGTTCTTGTTCTTGGGAATACACTTTACGTTGCGAATGTGGGTGATTCGAGGGCGGTAGTGGCTGTTAAAAATGGGAATCGAATTGTGGCTGAGGACATGTCTCATGATCAAACACCATTTAGGAAGGATGAGTGTGAGAGAGTAAAGCTAGCTGGGGCTAGGGTTTTGACCATTGATCAAATTGAGGGGCTTAGAGATCCGGATATTCAAGTATGGGGTGATGAGGAGAGTGAGGGAAATGATCCTCCTCGATTGTGGTTTCCTAATAGTTTGTATCCTGGTACTGCATTTACGCGGAGTGTAGGAGACAGTGCAGCGGAGAAGATTGGTGTCACTGCTGTCCCTGAGGTTTCAGTTGTTCAACTGACTCAAAACCATCTTTTCTTTGTCGTTGCAAGCGATGGAGTTTTCGAGTTCCTTACAAGTCAAGCTGTTGTTGATATGGCTGCAAGGTATGCCGATCCGCGGGATGCATGCTCTGCTATTGCTGGAGAATCATATAAGCTATGGTTGGAGCATGAAAACCGGACAGATGATATAACAATCATCATTGTTCACATCAAAGGCCTCTCTAATTCAGGTGGTACTGGAACTGTTGGGCTGAATGGGGTCCGCATAAGGCATTCAAATTCAGAGCGGGGAACCTCCGAGATATCAGCTACCACTGGAAGTTCAGAAGCTTTTCGCTCCTTCAGAAGTGATTTATCAGATCTGCATATCTCTCAGCATGTGGGTTTGATGAACAGGAGTACAGCAATTGTCGTTCCATCTCCTGCGCAGCACCGACCGTTAGAAGTGAAAGGCAATATGAGAATTCAACAACGTTTTCCATCGAACGGAATTCAGAGAGAAGGAAATTGA 1341 44.3 MGCVLGKCCTSSRYQPSSDGDITQFGDAPPCSLHGKHILTGRSLESVRVPSHNYNLEYSLLTQRGYYPDSPDKENQDSFCVSTQIRGNPNIHIFGVFDGHGQFGMQCSNFVKDRVVQLLCNDSKLLEDPVKAYNSAFLTANDELHNSEIDDSMSGTTAITVLVLGNTLYVANVGDSRAVVAVKNGNRIVAEDMSHDQTPFRKDECERVKLAGARVLTIDQIEGLRDPDIQVWGDEESEGNDPPRLWFPNSLYPGTAFTRSVGDSAAEKIGVTAVPEVSVVQLTQNHLFFVVASDGVFEFLTSQAVVDMAARYADPRDACSAIAGESYKLWLEHENRTDDITIIIVHIKGLSNSGGTGTVGLNGVRIRHSNSERGTSEISATTGSSEAFRSFRSDLSDLHISQHVGLMNRSTAIVVPSPAQHRPLEVKGNMRIQQRFPSNGIQREGN 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5436842 5440963 + ClCG05G005550.2 Cla05g00593 272083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00593 446 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 36 432 - -
Cla05g00593 446 Gene3D - 43 349 IPR036457 -
Cla05g00593 446 ProSiteProfiles PPM-type phosphatase domain profile. 57 347 IPR001932 -
Cla05g00593 446 Pfam Protein phosphatase 2C 83 323 IPR001932 -
Cla05g00593 446 CDD PP2Cc 73 347 IPR001932 -
Cla05g00593 446 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
Cla05g00593 446 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 36 432 - -
Cla05g00593 446 SMART PP2C_4 49 345 IPR001932 -
Cla05g00593 446 SUPERFAMILY PP2C-like 45 349 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00593 Cla06g00528 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00593 Cla-Chr5:5436842 Cla06g00885 Cla-Chr6:13604639 5.07E-34 dispersed
Cla05g00593 Cla-Chr5:5436842 Cla06g00528 Cla-Chr6:6360444 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00593 - - csv:101212684 817.379