Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00594 ATGTCGTATCAGGGTTTTGGCAAGGCTTCAGGACCAAGCGCACCGCCGAAACTGCAACATTCTTTTGGAAATTCAGCAATTCCTGATTCAGTTTCTTCCCTACGCGATTCTAGCCAACATGAGGCATTGGGCAGTAGAGGTCAGTCGCATACTATGGCTTTTCAAACCACTGGTACTGCTTCAAGTCTTCATCATCAATATCATAGGCCTATTTCACCTTCTCCTACATTTGAGGATCAGCCAAAGGTGCGCGGAATTCCTCCCAACTCACAAGCTTATCAAGTCCGATCCCCTTCAGAACAATCTTATGATCACGATACAAATATTCTAACTGAATTTGGTAACGTTCAAGCACCAAAGAGAACCAAATCTCCAGAGAAACCATTCGTGAGTCTTCGGTCTGCACAGACTAATTTGCAAAGGCCTTCTACCTCGCCTCCTAGATCATTTTCTAGGTCAAATGCTCATGAAGTTGTGGGTTCCATGAGGAATATAGATGCTGAATCAGTAGCAACTGGGTCCCCTAGTGTCCCGGTTCCCAAAAGAACAAGGTCGCCAACTTTGCCATCATCAGATCAAGTCTCTAGTGGCAATTCTCATCCTATTCATGATGACACTGAACGAGAAAGGTTAGCCAAGGCAAAGAGACTTGCTCGCTTTAAGGATGAATTAGCTGAAGTTACGCACAACAAATTGGGTAGTGTGGATGTAAGGGATAATAATACAAATAGAAACGAGCATTCAACTACAGAAAGGGACAAATACATGTCAAGTCAATCTTTGGAGTCATCAAGAAATTTGGCTCATGGGAATTCTATGCCTGATTATGAAGCTTTGGAATCTTCAAGCATAATAATCGGACTCTGCCCAGATATGTGCCCAGAGTCAGAGAGGGGTGAACGAGAAAGGAAAGGTGACCTTGACCATTATGAGCGGTTGGATGGGGATAGAAACCAAACTAGCAAATTGCTTGCAGTTAAGAAGTACACCAGAACAGCTGAGCGGGAAGCTAATCTTATAAGGCCTATGCCAGTTTTGCTGAAAACGATCGATTATTTGCTGGATTTATTAAGTCAACCCTATGATGAAAAGTTTTTAGGAATATATAACTTTTTATGGGATAGGATGCGAGCAATTCGCATGGATCTGAGAATGCAACATCTTTTTAATGAAAATGCCATTACGATGCTGGAACAGATGGGGAGAAAGTGTTCTTTAGAAGAGGATGAACCCCTGAGGCTTTGGTTTGGGTGCATAGGGTGTCTAACTGAGGGGCTCTTGTGCTGTGTTAGCGTGGGAACCTTTCAAAGGAAAATAAACCTCCTCTTCTTTTGGGAGGGGAAGGATAGTGGTGGTTGGTTCTCGTTTAGAGATGCTTTAGGCACCTTTGGTCTTCAGGGAGAAGGCTTTGCTGAGGGATTTGATGCTCACCTTAACATTGAACAAATGAACAAAACGTCAGTGGAATTGTTTCAAATGTATGATGATCACAGAAAGAGAGGCATTGTTGTGCCCTCTGAAAAAGAATTTCGTGGTTATTATGCACTTCTCAAGCTGGACAAGCATCCTGGATATAAAGTTGAACCTGCAGAGCTCTCACTAGATCTTGCAAAGATGACTCCTGAGATGCGACAGACTGCAGAAGTCAGATTTGCCCGTGATGTTGCTAGAGCTTGTAGGACATGTAACTTTATCACATTCTTTCGGCTTGTGAGGAAAGCAAGTTATTTACAAGCATGCTTAATGCATGCTCACTTTGCAAAGTTGCGAACACAGGCTCTTGCATCATTGCACTCTGGTGTTCAGAATAACCAAGGACTGCCAATTGCCCATGTCCGTAAGTGGATTGGGATGGAGGAAGAAGATATTGAAGACCTTTTAGAGTATCATGGTTTTTCAATTAAGGTATTTGAAGAGCCTTATATGGTTCGAGAAGGTCCATTTCTTAATAGCAACAAAGACTTTGCTACCAAGTGTTCAAAACTTGTTCACCTGAAGAGGTCAAGAATGATAGTAAACGATGTCTCACCGAAGAGTAAAAATGAAAACTTGATCAATGGTGCTACTGAAAAGACCCCATCGACAAGGAAGAGTAAAAATGAATTCTTGATCCCTGGTACTACTCAAGAGATCCCATTGGCAAGGACTAAGAAGGAATCAAAGACATTTTCGTTTGAAAAGATTAGTTCTCCCCGTCCCATATCGACTGAAAAAAAAGAAAGTTCCATGCATGAAACAGATGAAGAAATGACTGAATTTGATGATCAGTTGATTCCAGTAGATCACAAGCAAGTGCAATCGATGATTGAAACGTCGGAAGTTTGCCAATTGCATGAATATAACCATGAGGCAAATGGTGCTCTCCTACAATCTAGTCCCAGATCATGTGAACCATTAAGGACTGAAGTTAAATTTGTCGGTAATCAAGTTTATGATGGTCTTTTCATGGCCTCTCCAGTTAGAAACAATTCTGCTAGGATGGGGTTGTCTTTACCACTTGTATCAGACGCGTCGCTTCAAAAGATATCTGCTTGTGGGTACAATGATAATGTAATTAGAAGCATTGAACCCCAGAACATAGTCATTAATGTGATGGAAGATGAAGAAATTTTGAATGCTAATCAGGAAAATAAACATGATATTATTTCAGCAAGTTGTCCCGATGAAGAAATTGCAGATGCAAGACTCAAGTTGATCTTAAGGTTATGGAGACGCCGAGCTTTAAAGAGAAAACAATTACGTGAACAAAGATTATTAGCGGCTAAAGCTGCATTCAGTACATTGTCAGTGGGACCACCAATCCAATTGAATAACCATAAAATTAAGAGTGTTGGTATATTCGACATTGATCACATCGTGAGAGAAAGATGGAAAAGGCAGAAACTGTCATGGTCCATAGTTAATGTTTCAGGAGTAGTAGCTAGCATTCTCAGCAGAAGGAATGTGGATAGGAAGTGCATTTGTTGGAAACTTGTTGTCTGCTCTCAGACGGACAATTCTGGTGATGTGGTCCAAAGGACCCGGGATTCTCCTTTTGCAGCAGGTTCCTGGTTGCTTTCGAAGCTTATGCCCTCTGAAGCTGATGATCTAGTTTTCTCAACTTCTTTTCTTTCCATTTGGAATAGTTGGCTCTCGGGTGAAACTGGTGTGGATTTAAGTTGTTTCTTGTCCATAGTTAGATATGCAAATTTTGATAATCTTCCAGAGACAGTGCATGGGGCAAGTGCAATCTTATTTGTTGCAACTGAAAGCATCCCTCTAGATCTTCAAAGAGTCCAACTCCACAAGCTGCTGGCGTCAATACCTTCTGGATCTTGTTTGCCTCTTCTGATTTTGAGTGATTTTCATGATGAGGTCTCCGCCTCACTGGCAAACAAACTCGACTTATATGATATTGATAAATCAAGGATACACAGTTTTCAGGTTGTTTCACTCTTAGACAACCCTCATTTGAGGCATTTGGGTTTTTTCAGCGATGAGAAACTTAAGGAAGGATTGAAGTGGCTAGCAAATGAATCACCATCACAACCTGTTCTTCACCGAGTCAAAGTGCTTGACTTGATTATTTCCCACCTAGATCCATCTATGGAGGTGCTGGATTCTATGAATGAAAAAGACGTTTCTCCGAACCACTGTATCTCAGCATTTAATCTAGCCTTGGATCAGTCAGTTGTGGATATTACAGCTGCTGTCATGGCAAATCCTTCTAACTGGCCTTGCCCTGAGATTGCGTTGTTGGAGTCTTGTAACGAGAAGGTGTTTACAACCAATGCGTTGCCTCCTGTAGGGTGGAGTTTGGTAGAAAATGTTGAACCTCTGAAGCAGGCTTTGATGGACCTTAAGCTTCCAACTTTTCCTGATATGTCCCGGTTGACCAAAGGCTCAAATACGATCAAACAGATACCTACCGTAAGAGATAACCTAGAAAGCTGCTTGAGATGTTATCTGACTCAAACTAGTGAGATCATGGGACAACAACTTGCATTGGAAGAGGCTCATATAATGCTCCAAAAATGTGCTAAACTTGAGCCCCATAATTTCAACTATTTCATTGTTCCACATTGGGTGACGATTTTTAGACGGATTTTCAATTGGAGGTTGAGGCATTTTCCTGGCAGGTCCTCTTACGTTCATATTGTGGATTGCTGCCATGGTGCATCTGTATCGAGTAGGGAACCTCCATCGTATCGTCCTAACCAGCCACTTTTAGATGAAGTAATTGAAGTAGCTTGTAGTTCCCTCTCAATTGATCAGGAGAGACACTTTTCAGAAGATCGTCAACCTCTTGCAACCGTAACCTCAAACAGTAAGCCTTGTGAAGTTGTAACAACAATCGATTTTGCAGATGATGATAGCAATAGCACTCGACAGATCGGTTTTGTTTGTTCTGAGAGTGTACCTAATTCAGCTCGGGAACTAAATTGTACAGGTAAAGAAATAGTCGTCAGTGATACGGGATATTCAGAAGCAGCAAGACTTAAGGAGTTGTTGGATCAGTGTAGCAAACGACAGGATGCCATAGAAAAAATGTTGTCTATTTATTTCTAA 4548 41.51 MSYQGFGKASGPSAPPKLQHSFGNSAIPDSVSSLRDSSQHEALGSRGQSHTMAFQTTGTASSLHHQYHRPISPSPTFEDQPKVRGIPPNSQAYQVRSPSEQSYDHDTNILTEFGNVQAPKRTKSPEKPFVSLRSAQTNLQRPSTSPPRSFSRSNAHEVVGSMRNIDAESVATGSPSVPVPKRTRSPTLPSSDQVSSGNSHPIHDDTERERLAKAKRLARFKDELAEVTHNKLGSVDVRDNNTNRNEHSTTERDKYMSSQSLESSRNLAHGNSMPDYEALESSSIIIGLCPDMCPESERGERERKGDLDHYERLDGDRNQTSKLLAVKKYTRTAEREANLIRPMPVLLKTIDYLLDLLSQPYDEKFLGIYNFLWDRMRAIRMDLRMQHLFNENAITMLEQMGRKCSLEEDEPLRLWFGCIGCLTEGLLCCVSVGTFQRKINLLFFWEGKDSGGWFSFRDALGTFGLQGEGFAEGFDAHLNIEQMNKTSVELFQMYDDHRKRGIVVPSEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEMRQTAEVRFARDVARACRTCNFITFFRLVRKASYLQACLMHAHFAKLRTQALASLHSGVQNNQGLPIAHVRKWIGMEEEDIEDLLEYHGFSIKVFEEPYMVREGPFLNSNKDFATKCSKLVHLKRSRMIVNDVSPKSKNENLINGATEKTPSTRKSKNEFLIPGTTQEIPLARTKKESKTFSFEKISSPRPISTEKKESSMHETDEEMTEFDDQLIPVDHKQVQSMIETSEVCQLHEYNHEANGALLQSSPRSCEPLRTEVKFVGNQVYDGLFMASPVRNNSARMGLSLPLVSDASLQKISACGYNDNVIRSIEPQNIVINVMEDEEILNANQENKHDIISASCPDEEIADARLKLILRLWRRRALKRKQLREQRLLAAKAAFSTLSVGPPIQLNNHKIKSVGIFDIDHIVRERWKRQKLSWSIVNVSGVVASILSRRNVDRKCICWKLVVCSQTDNSGDVVQRTRDSPFAAGSWLLSKLMPSEADDLVFSTSFLSIWNSWLSGETGVDLSCFLSIVRYANFDNLPETVHGASAILFVATESIPLDLQRVQLHKLLASIPSGSCLPLLILSDFHDEVSASLANKLDLYDIDKSRIHSFQVVSLLDNPHLRHLGFFSDEKLKEGLKWLANESPSQPVLHRVKVLDLIISHLDPSMEVLDSMNEKDVSPNHCISAFNLALDQSVVDITAAVMANPSNWPCPEIALLESCNEKVFTTNALPPVGWSLVENVEPLKQALMDLKLPTFPDMSRLTKGSNTIKQIPTVRDNLESCLRCYLTQTSEIMGQQLALEEAHIMLQKCAKLEPHNFNYFIVPHWVTIFRRIFNWRLRHFPGRSSYVHIVDCCHGASVSSREPPSYRPNQPLLDEVIEVACSSLSIDQERHFSEDRQPLATVTSNSKPCEVVTTIDFADDDSNSTRQIGFVCSESVPNSARELNCTGKEIVVSDTGYSEAARLKELLDQCSKRQDAIEKMLSIYF 1515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5443838 5454467 - ClCG05G005560.2 Cla05g00594 272084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00594 1515 MobiDBLite consensus disorder prediction 1 207 - -
Cla05g00594 1515 PANTHER SAC3 FAMILY PROTEIN B 466 1515 - -
Cla05g00594 1515 MobiDBLite consensus disorder prediction 129 158 - -
Cla05g00594 1515 MobiDBLite consensus disorder prediction 254 270 - -
Cla05g00594 1515 MobiDBLite consensus disorder prediction 167 200 - -
Cla05g00594 1515 PANTHER SAC3 FAMILY PROTEIN B 70 400 - -
Cla05g00594 1515 ProSiteProfiles PCI domain profile. 479 673 IPR000717 -
Cla05g00594 1515 MobiDBLite consensus disorder prediction 90 118 - -
Cla05g00594 1515 MobiDBLite consensus disorder prediction 231 274 - -
Cla05g00594 1515 MobiDBLite consensus disorder prediction 17 69 - -
Cla05g00594 1515 Gene3D - 335 689 - -
Cla05g00594 1515 Pfam SAC3/GANP family 472 635 IPR005062 -
Cla05g00594 1515 Pfam SAC3/GANP family 292 402 IPR005062 -
Cla05g00594 1515 PANTHER 80 KDA MCM3-ASSOCIATED PROTEIN 466 1515 IPR045107 -
Cla05g00594 1515 PANTHER 80 KDA MCM3-ASSOCIATED PROTEIN 70 400 IPR045107 -
Cla05g00594 1515 MobiDBLite consensus disorder prediction 722 743 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00594 K23719 SAC3; nuclear mRNA export protein SAC3 - csv:101205161 2229.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00594 Cla-Chr5:5443838 Cla11g01265 Cla-Chr11:26171715 9.65E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g400 . . . . . . . . . . . Cma14g01664 . Car14g01497 Sed02g1285 . Cpe03g01404 Bhi01g00884 Tan10g0912 Cmetu10g1725 . Hepe05g1504 . Lcy11g1479 . . . . . . . . . Cone7ag0196 Cone4ag0189 Lsi05g01473 . . Cme06g00665 Blo02g00561 . . . . . . . . . Cmo14g01708 . . . . . . . . . . . . . Cla05g00594 Cam05g0654 Cec05g0662 Cco05g0658 Clacu05g0647 Cmu05g0616 Cre05g0684 . Csa03g01390 Chy06g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009906 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00594 Cla_Chr05 FPKM 14.353287 19.819883 3.003532 3.18614 6.818573 6.992461 8.015778 0.0 0.0 0.080055