Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00602 ATGCAAGGGAAAGGATCTAACGCTTCCGGCTTCGCTCTTCCTGACGGAGTCTTGCAAGTCCTGCCTTCTGATCCTTTTGAACAGCTCGACGTGGCTCGCAAAATCACTTCCATTGCTCTTTCCACTCGCGTCTCGTTGCTTGAATCAGAGTCCTCTGTTCTCCGTTCTAAACTTGCTGAGAAAGATGAGATCGTTGCTGACCTTCGGTTCCAGATCGAATCACTCAACGCTTTGCTCTCCGCGACTGCTGATAAACTCGTCCAGGCAGACGAGGAGAAGGAGAGCTTGAAGAAAGAGAATGCCTCGTTGTCGAACACTGTGAAGAAGCTTAGTAGAGATGTTGCGAAGTTGGAGGTTTTCAGAAAGACGTTAATGCTATCACTTCAGGAGGAGGGAGATAGCTCTACAGAAGTTCCAGAAGTTGTTGCTAGGATACAGAGCCAACCAAAAGAGGTTTCATCGTTGCCACCCTCTAGATATTCATCGATTCAGAGCCAGGTTTCTGACGTAGGAAGTTCGTTAGCAGAGGATCATGATTCAGATAGGGATAGTATACGACCTCGTATTCCGCCTGGCCTCCTGTTAGCGTCCCAGACAAGTACACCTCGGCTTACTCCCCATGGCTCTCCTCCTTCACTGTCAGCATCAGGATCCCCAATGAGAACATCAATGTCATTTTCAACGTCCAGGAACATTTTTGAAGATAGATCTTCAGAATATTCTTCTGCGCCCTCAAGCCACTATGGCTCGATTTCCTCCAACAAAGGGAGAACTCGGGTCGATGGGAAGGAGTTTTTCCGACAAGTCAGGAGCCGTTTGTCTTATGCACGGTTTGCTGCATTTTTAGCAAATGTGAAGGATCTAAATTCCCACAAGCAAACAAAAGAGGTTGGCTCTCTCATGCTAGTAGATGACACTGCGTGGGCTTTTGTGTATGAAGGTTTTCTCACGGACTTAGAATGCGATCATCTCATCTCCCTCGCTAAAGCGGAGTTGAAGAGATCTGCTGTCGCGGATAATTTGTCCGGAGAGAGTAAAGTCAGCGAGGTCCGAACTAGCTCTGGGGCGTTTATCCATAAAGCCAAGGATCCTATTGTTTCTGGAATAGAAGACAAAATTGCAGCATGGACATTTCTGCCAAAAGAAAATGGAGAAGACATTCAAGTGTTGAGATATGAATATGGGCAGAAGTACGATGCACACTTTGATTACTTTGCTGACAAGGTTAATATTGCCCGAGGTGGACATCGAATGGCAACCGTTCTCATGTATCTTTCCAACGTAGAAAAAGGCGGTGAAACTGTGTTTCCTTCTGCAGAGGAATCTCAAAGACGCCAGGCTTCGGAAACAAGTGAAGATCTCTCAGACTGTGCAAAGAAAGGGATAGCAGTTAAACCACGGAAAGGCGACGCTCTTCTCTTCTTCAGTCTCCATCCAAATGCTATTCCAGACACAAGTAGTCTACATGGTGGATGCCCTGTGATTGAAGGTGAGAAATGGTCAGCAACAAAGTGGATTCATGTCAATTCTTTTGACACCATCGTGAGAGACCATACGAACTGCGCCGATGAAAATCCAAGTTGTGAGAGATGGGCTGAACTCGGTGAGTGCACGAATAACCCGGAGTATATGGTCGGATCTCCCGAGCTTCCTGGCTACTGCAGGAAAAGTTGTAAGGCGCTCGGCCATCATCGCCGAAACCAAACCAAACCCACTTCAAATTTCTTCATTCTTCACACAAATCCCTTCAAAACCCTCTTTCTTAATCTCATTCCTAACATCTCTACCCTACTTCCTTTAGCTCGTTTCATTAAAATGGAGGTGGGATTGATGCAGAGACAGTGGGTTCAGTATATTAAAGGCTTACTCGGTGAGGGTACGCTGGATAGTCAGTATTTGCAGCTTTTGCAACTGCAAGATGAGAGTAATCCAACTTTCGTTTCTGAAGTGGTCACTCTTTTCTTTGAAGATACCGAGGAGCTTCTCAATAAACTGAGAATCGCTATATCACAGCCATCTGTTGACTTCAAAAAGATTGATGATCATGTACACCAGCTGAAGGGCAGCAGTTCCAGCATAGGTGCACTTAGAGTGAAAAATGCCTGCATTGACTTCCGGAGCGCCTGCGAGCAACAGAGTCCTGACTGGTGTTCAAGATGCCTGCAACAAGTAGAGCAAGAATTCTATGGTGTGAAGGAGAAGCTCAGTTATTTATATGCACTGGAGAAACGGATTTTGAATGCTGGTGGATCCATTCCCATGGACTTGGGTTTCTAA 2277 45.98 MQGKGSNASGFALPDGVLQVLPSDPFEQLDVARKITSIALSTRVSLLESESSVLRSKLAEKDEIVADLRFQIESLNALLSATADKLVQADEEKESLKKENASLSNTVKKLSRDVAKLEVFRKTLMLSLQEEGDSSTEVPEVVARIQSQPKEVSSLPPSRYSSIQSQVSDVGSSLAEDHDSDRDSIRPRIPPGLLLASQTSTPRLTPHGSPPSLSASGSPMRTSMSFSTSRNIFEDRSSEYSSAPSSHYGSISSNKGRTRVDGKEFFRQVRSRLSYARFAAFLANVKDLNSHKQTKEVGSLMLVDDTAWAFVYEGFLTDLECDHLISLAKAELKRSAVADNLSGESKVSEVRTSSGAFIHKAKDPIVSGIEDKIAAWTFLPKENGEDIQVLRYEYGQKYDAHFDYFADKVNIARGGHRMATVLMYLSNVEKGGETVFPSAEESQRRQASETSEDLSDCAKKGIAVKPRKGDALLFFSLHPNAIPDTSSLHGGCPVIEGEKWSATKWIHVNSFDTIVRDHTNCADENPSCERWAELGECTNNPEYMVGSPELPGYCRKSCKALGHHRRNQTKPTSNFFILHTNPFKTLFLNLIPNISTLLPLARFIKMEVGLMQRQWVQYIKGLLGEGTLDSQYLQLLQLQDESNPTFVSEVVTLFFEDTEELLNKLRIAISQPSVDFKKIDDHVHQLKGSSSSIGALRVKNACIDFRSACEQQSPDWCSRCLQQVEQEFYGVKEKLSYLYALEKRILNAGGSIPMDLGF 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5502008 5520043 + ClCG05G005640.2 Cla05g00602 272092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00602 758 PANTHER BNAANNG08570D PROTEIN 304 560 - -
Cla05g00602 758 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 383 508 IPR005123 -
Cla05g00602 758 Gene3D q2cbj1_9rhob like domain 302 508 - -
Cla05g00602 758 MobiDBLite consensus disorder prediction 147 173 - -
Cla05g00602 758 SMART ShkT_1 520 559 IPR003582 -
Cla05g00602 758 Pfam Hpt domain 649 725 IPR008207 GO:0000160
Cla05g00602 758 MobiDBLite consensus disorder prediction 147 257 - -
Cla05g00602 758 MobiDBLite consensus disorder prediction 194 256 - -
Cla05g00602 758 CDD HPT 647 726 IPR008207 GO:0000160
Cla05g00602 758 ProSiteProfiles ShKT domain profile. 521 562 IPR003582 -
Cla05g00602 758 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 643 752 IPR008207 GO:0000160
Cla05g00602 758 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 304 560 IPR045054 -
Cla05g00602 758 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 610 743 IPR036641 GO:0000160
Cla05g00602 758 Coils Coil 72 113 - -
Cla05g00602 758 SMART p4hc 307 507 IPR006620 GO:0005506|GO:0016705|GO:0031418
Cla05g00602 758 Gene3D HPT domain 602 758 IPR036641 GO:0000160
Cla05g00602 758 Pfam 2OG-Fe(II) oxygenase superfamily 387 507 IPR044862 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00602 K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] - csv:101215570 505.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00602 Cla06g00522 CCT
Cla05g00602 Cla06g00522 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00602 Cla-Chr5:5502008 Cla09g01806 Cla-Chr9:35629528 2.43E-108 dispersed
Cla07g01202 Cla-Chr7:29014834 Cla05g00602 Cla-Chr5:5502008 1.67E-28 dispersed
Cla08g01206 Cla-Chr8:24969192 Cla05g00602 Cla-Chr5:5502008 1.43E-23 dispersed
Cla11g00195 Cla-Chr11:2251372 Cla05g00602 Cla-Chr5:5502008 8.68E-08 dispersed
Cla01g02010 Cla-Chr1:34725529 Cla05g00602 Cla-Chr5:5502008 2.28E-75 transposed
Cla02g01663 Cla-Chr2:31472818 Cla05g00602 Cla-Chr5:5502008 5.08E-70 transposed
Cla02g01816 Cla-Chr2:33254295 Cla05g00602 Cla-Chr5:5502008 2.19E-32 transposed
Cla06g00523 Cla-Chr6:6308472 Cla05g00602 Cla-Chr5:5502008 5.45E-150 transposed
Cla06g00525 Cla-Chr6:6326332 Cla05g00602 Cla-Chr5:5502008 1.98E-89 transposed
Cla03g01602 Cla-Chr3:31817495 Cla05g00602 Cla-Chr5:5502008 2.65E-37 wgd
Cla05g00602 Cla-Chr5:5502008 Cla06g00522 Cla-Chr6:6300196 9.39E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g388 . . . . . Bpe14g01159 . . Cmo08g01164 Cmo17g00280 Cma06g01452 . Car06g01254 Car14g01488 . Cpe08g00223 Cpe03g01398 . . . . . . . Cla06g00522 Cam06g0561 Cec06g0561 Cco06g0568 Clacu06g0549 Cmu06g0545 Cre06g1314 Cone14ag0800 . . . . . Chy11g01453 Cme06g00676 Blo02g00569 . Bda11g00549 . . Bpe13g00640 . Bma06g01526 . Cmo06g01453 Cmo14g01698 . Cma17g00292 Car08g01069 Car17g00269 Cpe12g00244 Cpe17g00106 Bhi12g01760 . . . . . . Cla05g00602 Cam05g0663 Cec05g0672 Cco05g0667 Clacu05g0657 Cmu05g0626 Cre05g0695 Lsi09g01381 Csa03g01401 Chy06g00644 Cme11g01958
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002376 1 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 1 1 2 2 2 1 3 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00602 Cla_Chr05 FPKM 4.584893 5.072402 0.920502 0.573995 10.814851 12.204405 11.130647 0.388695 0.355741 0.396124