Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00610 ATGGCATGGAGGGTAGACAAAAATGGACAGGGCAACCAAATCCGTGAAGAAATTGGAGCTGATGATGAACTACATGGAGAACTCTGGCTAGATTCTGAAGAAATTACCAAGCCCTCGAGAGGACGATGGTGCTGTGTTTACCACCTGCTCGTATTAGAGAGATGGTCGTCCAAGCACGCTTCGTACGTGAGCAAACAAAAAAAATCGGGTTTCGGCCCATTTATGGAAACGTTGTCGATCTCCAAGAAATCAAGCTCGATTCTCTTTCCTCTGTTGCTAATCACTGTCACTCTCTCTCTTTCTGTTGGTCGAGGAGCACTTGTGGTCACTCGATTTCGTAATCCTGAAACCCTAGCAACACCGGTAGAGCTGAGAATGAATCAGTACCACATCTATGAAGCCATTGGCCGTGGAAAGTATTCGACCGTGTATAAAGGGAGGAAGAAGAAGACGATCGAGTACTCCGCGATTAAAAGCGTGGATAAATCGCAGAAGAACAAGATTCTCCAAGAAGTCAGAATACTTCACTCCCTCGATCATCCAAACGTACTCAAGTTTTACTCATGGTATGAAACTTCTGCTCACTTATGGTTGGTGTTAGAGTACTGTGTTGGAGGAGATCTCATGAGCATCCTGCGCCAGGATGGCAAATTACCTGAAGATTCAATTCACGACATTGCTAGTGATCTTGTCAGAGCATTGCAGTACTTACACTCGAAAGGAATCATATACTGTGATTTGAAGCCATCAAATATCCTACTGGACGAAAATGGTCATATAAAGTTATGTGATTTCGAACTAGCTAGAAAGTTGAGTGAGATATCAAAAATAAATCCATCGGCGCCACAAACAAAACGAGGCACACCCTGTTATATGGCTCCTGAATTGTTCAAGGACGATGGTACCCACTCCTACGCGTCTGATATGTGGGCTCTTGGTTGTGTCCTGTATGAATGCTTTGTGGGGAGGCCTCCTTTTATGGGAAGAGAGTTCACTCAACTAGTAAAATCTATCCTCTCAGATCCTACCCCTATTCTTCCTGGTAGCCCTAGTCGTCCTTTTGTTAACTTGATTAATTCATTGCTAGTAAAAGATCCAGCTGAAAGAATACAATGGCCTGAGCTTTGCGGTCATGCTTTCTGGCGAACTAAAATCACTCCAGTATCTTTACCTCCACAACCAGCTTTTGCAAATGTGATAAATCACCATTCTAAACCTTGTTTGTCGGAAAGAAATGGTGAAAAACTTGCTCAGAACAGGACTCCTCCTAAATATAGAGAGAAAGATGCAAAGGGCACTTTAAGACAAAATGAAAATTCTGCTTTTGGTTCAAGTAAAAATGAAACACTTGTTAAAGGTACTCCAGGCAGTCAAAAAACTCAATCAAAGGTTTCTAGCAGAGTGGTTGAGGAGAAGAAGTTGAAAGAAACTCCATCTGCTTCTAAGGGAGTAAATCTTTTAAGACTTTCAAGGATAGCAAAATTAAACTTGCAAAGAGAGAATGATAAAGAAAATTACAGAAGACCTGTTTCTGGCAACTCTGAAAATGATTCTGAGGTTGAACTTAAGAACACTGATATGGAGCTTGATTTTAATGAGAATGTTGAAGATGAGTCTCACGATGAACCTGACGAGTCCGATCATTTAAATGGCAATCAGGAAGACAGTACATCAAATGAGAATCATCAAGGGAAGATTGAAGAGGCTCAAAATATGGGAGGAGACCTTTCAGATTATTCACCGGCAGTTAATACCAATGCCTCAGATCTATCAAATAAACATGATCAGGAATCACCCTTGGTGCGTCAAGAAGTGGTCGCTACTTCACCTAGTGCTAGCCCTCAACTTAAGAACCAAAGAACTAAAGAAGGTTCAGCATATGCTCTTGATACCGATTCTTTGAAGTCATCCAAGAATCTTTCAGAGTTTTTTTGGCATCAGTCTGATCTTTCTGTTAAACCAGTAATGCCGAGCAAAAAAGCCGATAAAATGTCAGAAGTTAATACTGCCACCCTTCCTTTTGAGGGATTGCAAGCACCTGATTTTGTGAAGATGCCTAAGGAGCGGCAGGATGCCATGAGCAGTAGGATTATTGCCACTCTCAGTGGAAATACTAGTATTGGTGAGAAGCAAAACATGATTAGATATCTTGAGATGCTTAGTAATAATGCTGATGCAGCTAATATTTTGACCAATGGGCCCGTAATGCTCATGCTTGTAAAAATGCTCAAGCAGTCCAAGGTTTTGCAACTGCGTGTTCAACTCACATCACTAATTGGCTTGCTGATTCGCCACTCTACTTTTATTGAGAATGACTTGGCAAATTCTGGTCTTTTATTTTCACTTACTGATGGACTCAGAGACAAGCAAGAAAAAGTTAGGAGATTTTCTATGGCTGCTTTGGGCGAGTTGCTTTTTTATATCTCCACTCAGGAAGAGCATAATAGCAATGCCAATCCTCCAGAGTCTCCTTTGAAGGAGACTAGATCCCCCTCTGGATGGCAGGTTCCAAATTCATTAATTTCTTTAGTCTCATCAATTCTCCGAAAGGGAGAGGATGATATAACTCAACTATATGCATTGAGGACCATTGAAAACATTTGTAGTCAAGGAGCAATCTGGGCATCTCGCTTTACCAGCCAAGATGTGATCAGCAACCTATGCTACATATATAGAGCTTCTGGGAAATCGGAGAATATGAGGCTCACAGCAGGATCATGTTTGGTTCGCCTAGTCCGTTTCAATCCTTCTTGCATTCAGTCAGTTACAGACAAATTGTCTTCGAAGGACATGGCATGTGCCCTAGTTAAGGGCAATCCACGTGAGCAGCAAATCACCTTAAATCTTCTAAACATGATTATGTTTGGAGGCCATATCTTAACCAGCATTGGAAGGTACCTTCTACCTTTAATGGAGGAGAAGAATCTTGTCTCCAGTCTTGTGTCCCTTATTGAGCAGGGAAGTGAAGTTATGAAGGGAAAGGCAATTGTTTTCGTGGCTTTCCTCTGTAGGAGTGTGAGACGGTGGTTGCCTCTCTTCTTTTCCAATGCTAGGTTACTTTCTTCAGTGGACAGGCTTGCGAGGGAGAAAGACATCTATGTCCAGCAGTGTTTGACTGGATCTGTGCATATCGTGGCATCTATCGTGCCCAGTTTGTTGGATGTGATTATAGGAGATATTCAACAAATGATGGGAGGACGACGTCATGGGCATATCTCCTCGCCCCTTACCAGCCGTGCTGCTCCAAAGACCAACATTCACTTGTTTCCTGTTGTCCTTCATCTTCTTGGAAGTTTAACCTTTAAGCGCAAGGTTGTTAGTCCACAGGTGCTGCAGCAGTTGTCTGATCTAATCAGGCATATAGAGACACCATTTCAGGGCAGGGATGACTTCCAGATAACATTACTTCGGGTTATTGAATCTATCACAGAGGAATTCTCGGTCATACTTGAAAACCCAGAGTTTTTTGTCCATAAAATTCTCCCCAGTTTGGCTGTTCTTTACAAAGGTAACAAGGATGGGGATGCAAGATTCTTATGCCTAAAAATTCTCTTTGATGTGATGGTCATTTTCCTGAATGAACCATCCTTAGATGGGCAAAGGTTGGAGGATCTAAAGCAGATAGCAAATTTACACTTCCTCCCTCTCTATCCTGCCTTGATAGAAGATGATGATCCCATACCCATGTACGCTCAGAAACTTCTCGTGATGCTCATTGAGTGTAATTACATCAAAATTTCAGACATTTTACATCTAAAGACAATCTCTCAATGCTTTGAGTTTTTGCTTGGCGACCTTTCAAATGCAAATGTAAGTAGTGTAAAGCTATGTTTAGCGCTGGCGTCTGCTCCAGAAATGGAATCAAGAATACTTTCTCAACTCAAAGTCGTTCGAAGAATAGGAATTCTGCTAGAGTTTATATATGCGAAGGATATGGAGGATTTTCTCGAACCAACACTTGGCCTTTGTAGAGCTCTCCTTCTGCGTTCTGTTAGTTGTAGAAAGGGCTTCATCTACTCAAAAGAACCGTTTCTTCTGGGTGACGGTACTCCCGAGCAAAATGTTCTTGTTAACCAGCAGGAATGCATTAGAGATATATCCGACTTCGGTAACAATTTTGGAGTTTTGTTGGAGTTGAGTGGGTCCTCTGAAGCAAATATTGCCGACATAGCCTCTGAATGTGTAGTGTTTTTGATTATGGCGGCTCCTAGGGAAGGCACCACTGGTCTTCTTACAAATCTTCACAAAGTTAGTGTAATCCTGGAGTCCTGGCGGAAAGGCGGCTGCCTCTTCCTTGTTCAGAGAATGCTGCATTCTCTCGGTTATGCTTGTCGACAGTACTTGGTCCATGCGATGATATTATCGCTTTCCATATCTGAAATTTCACGGATTGAGGCTATTATATCTGATATCAAGAGTTCAAACACGCCACGTTTAGCTAATGATGCAATGCTTGTGGCTGTGGAGTTGCAGCGGCTTCATCGTTGTATTTAA 4494 42.08 MAWRVDKNGQGNQIREEIGADDELHGELWLDSEEITKPSRGRWCCVYHLLVLERWSSKHASYVSKQKKSGFGPFMETLSISKKSSSILFPLLLITVTLSLSVGRGALVVTRFRNPETLATPVELRMNQYHIYEAIGRGKYSTVYKGRKKKTIEYSAIKSVDKSQKNKILQEVRILHSLDHPNVLKFYSWYETSAHLWLVLEYCVGGDLMSILRQDGKLPEDSIHDIASDLVRALQYLHSKGIIYCDLKPSNILLDENGHIKLCDFELARKLSEISKINPSAPQTKRGTPCYMAPELFKDDGTHSYASDMWALGCVLYECFVGRPPFMGREFTQLVKSILSDPTPILPGSPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKITPVSLPPQPAFANVINHHSKPCLSERNGEKLAQNRTPPKYREKDAKGTLRQNENSAFGSSKNETLVKGTPGSQKTQSKVSSRVVEEKKLKETPSASKGVNLLRLSRIAKLNLQRENDKENYRRPVSGNSENDSEVELKNTDMELDFNENVEDESHDEPDESDHLNGNQEDSTSNENHQGKIEEAQNMGGDLSDYSPAVNTNASDLSNKHDQESPLVRQEVVATSPSASPQLKNQRTKEGSAYALDTDSLKSSKNLSEFFWHQSDLSVKPVMPSKKADKMSEVNTATLPFEGLQAPDFVKMPKERQDAMSSRIIATLSGNTSIGEKQNMIRYLEMLSNNADAANILTNGPVMLMLVKMLKQSKVLQLRVQLTSLIGLLIRHSTFIENDLANSGLLFSLTDGLRDKQEKVRRFSMAALGELLFYISTQEEHNSNANPPESPLKETRSPSGWQVPNSLISLVSSILRKGEDDITQLYALRTIENICSQGAIWASRFTSQDVISNLCYIYRASGKSENMRLTAGSCLVRLVRFNPSCIQSVTDKLSSKDMACALVKGNPREQQITLNLLNMIMFGGHILTSIGRYLLPLMEEKNLVSSLVSLIEQGSEVMKGKAIVFVAFLCRSVRRWLPLFFSNARLLSSVDRLAREKDIYVQQCLTGSVHIVASIVPSLLDVIIGDIQQMMGGRRHGHISSPLTSRAAPKTNIHLFPVVLHLLGSLTFKRKVVSPQVLQQLSDLIRHIETPFQGRDDFQITLLRVIESITEEFSVILENPEFFVHKILPSLAVLYKGNKDGDARFLCLKILFDVMVIFLNEPSLDGQRLEDLKQIANLHFLPLYPALIEDDDPIPMYAQKLLVMLIECNYIKISDILHLKTISQCFEFLLGDLSNANVSSVKLCLALASAPEMESRILSQLKVVRRIGILLEFIYAKDMEDFLEPTLGLCRALLLRSVSCRKGFIYSKEPFLLGDGTPEQNVLVNQQECIRDISDFGNNFGVLLELSGSSEANIADIASECVVFLIMAAPREGTTGLLTNLHKVSVILESWRKGGCLFLVQRMLHSLGYACRQYLVHAMILSLSISEISRIEAIISDIKSSNTPRLANDAMLVAVELQRLHRCI 1497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5635987 5646152 + ClCG05G005750.2 Cla05g00610 272100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00610 1497 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Cla05g00610 1497 Gene3D Transferase(Phosphotransferase) domain 1 122 452 - -
Cla05g00610 1497 Pfam Protein kinase domain 129 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00610 1497 MobiDBLite consensus disorder prediction 813 832 - -
Cla05g00610 1497 CDD STKc_ULK4 128 381 - -
Cla05g00610 1497 MobiDBLite consensus disorder prediction 407 479 - -
Cla05g00610 1497 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 126 1493 IPR044591 GO:0000911|GO:0000914|GO:0008017
Cla05g00610 1497 MobiDBLite consensus disorder prediction 420 434 - -
Cla05g00610 1497 MobiDBLite consensus disorder prediction 602 625 - -
Cla05g00610 1497 MobiDBLite consensus disorder prediction 503 523 - -
Cla05g00610 1497 ProSiteProfiles Protein kinase domain profile. 129 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00610 1497 MobiDBLite consensus disorder prediction 535 625 - -
Cla05g00610 1497 SMART serkin_6 129 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00610 1497 SUPERFAMILY ARM repeat 707 1033 IPR016024 -
Cla05g00610 1497 MobiDBLite consensus disorder prediction 435 464 - -
Cla05g00610 1497 MobiDBLite consensus disorder prediction 552 566 - -
Cla05g00610 1497 SUPERFAMILY Protein kinase-like (PK-like) 125 417 IPR011009 -
Cla05g00610 1497 MobiDBLite consensus disorder prediction 577 594 - -
Cla05g00610 1497 Gene3D - 692 1227 IPR011989 -
Cla05g00610 1497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00610 K17545 ULK4; serine/threonine-protein kinase ULK4 [EC:2.7.11.1] - csv:101217007 2576.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00610 Cla-Chr5:5635987 Cla01g00500 Cla-Chr1:5360352 4.93E-49 dispersed
Cla05g00610 Cla-Chr5:5635987 Cla02g00317 Cla-Chr2:3073844 2.50E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g370 . . . . . Bpe14g01152 . . . . . Cma14g01648 . Car14g01481 . . Cpe03g01392 Bhi01g00926 . . . . . Lcy11g1459 . . . . . . . . . Cone7ag0183 Cone4ag0178 Lsi05g01496 . . Cme06g00683 Blo02g00576 . . . . . . . . . Cmo14g01692 . . . . . . . . . . . . . Cla05g00610 . . . . . . . Csa03g01408 Chy06g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009196 1 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80544 PF00069 Pkinase 5.80E-68 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00610 Cla_Chr05 FPKM 0.0 0.680271 0.213138 0.208303 0.0 0.0 0.0 0.269353 0.0 0.0