Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00611 ATGAGAGCGGGGGGAAAGATAGTACAGACTACGGAGAGAGAGAGAGGGAGAGAGACCCGCGTAGCCATCGTTACCATTTTGCGAAACCAAAAACATTTTTACTCCATTTTTTCTTTGCTTTCACTTCTTCCCTTCTCTGCTTCCATTTCCACTCATTTTCCTCTTCCAATTTTCAGCTCAGATCTCTCCAACAAACTCCTCACTCACCCACCCCTTTTCCCTCTCCTCTGTTTGCTCGCGCAAGTTCGAATTCAATCCCCTAATCGCTTCAACTGGAAGTCTATCGTTAATTCAGCGGTTAGAGTCATGACTATGGAGCTTTTCGAAGTTCAACCGGCCGAACTTAAATTCACTTTTGAGTTGAAGAAGCAAAGTTCATGCTTGATACAACTTATCAATAAGTCCGAGCAACATGTTGCTTTCAAGGTAAAAACTACATCTCCCAAGAAGTACTGTGTGCGACCCAATACTGGCATCATTAAGCCCAAGGATACGTGTGACTTTACAGTCACCATGCTAGCTCAGCGTACGGCTCCACCTGATATGCAATGCAAAGACAAATTCCTGGTCCAAGGCACAGTCATCTCCCCTGGAACATCTGAAGAGGACATCACATCTGACGTGTTTGCAAAAGATAGTGGCAAGCACATTGAAGAGAAGAAGCTGAAGGTTTTTCTAGTGAGCGCAACACCACCTCCTGTTTTATTACCAATTAATGGTGAGTTGAAACTAGATTCAAATCATGAAACTTCCATGCCAAGAGATAGAATGCAGACAGGAGTTGAGAACATACCTCCACCTCATAAGGTTGCAGAAGACTCCAATGGACTTGATACCTGCAAACACATAGATGAACTTAGAACAGTTGATACCCCAGAATTGTTATCTCCACCTTATAAGGTGGCTGAGGGAGTTGAGAAAATTGATAGTTGTAAAGATTCAGGTGAGAATAGAGCAGCTGTGGATGTTTCAACAAGACAAAATGAGGATGTGGTGGCCAAACCAAGTGAAAATATTGAAACCACGCCAGCTGAGGGAATTGAGGAATCAAAACTGGCGAAGGATCTACCAGAGTTAAACTTAACTAAAGACTTTCAAGAGCTGAAATCAAAGCTTACTCTCATGGATGCAGAACTACTAGAGGCTGAAGCTACCATAATGAGGCTGAAAAAGGAGAGGATGATAACAACTCAGGAAAGGGAAATGCTCAAGCGTGACTTGTCTTCTTCTTGGATACTTCATCCATCCCTAGCAGAAGCAGAACAAATCAATGGGGGTTCCATCACAGCAGTTGATTCGAATTTCTCCGCTTTCTCGCTGGTTTCATGCGCCTGGATGATTGGAGGAGCTTTCGTGCTGCGGTGTAGAACCTCTTCCTTCCCGTACATAATACATTTGCTTAGTCTCAATGTTGGAAATGGGAGAATGGCAGTGATGACAAGGCTTCTGGCTGCTGGGAGTTTCTCTCGTACCATTGCAGAGGAAGTTGGTCACCAGAAATTTGCTTCTGAATTTATCTGCCGAGAACTTCGTGATGCAGATGAAGCAAATTTAATTGATGAGGAAGATATGCACGTTTTTGGTTTGAAGCCTATGGTTGATCCTCTGAACTTGGTTTGCTGCAATATTTGTAAGAAGCCAGTAAAGGCCAGTCAATATATCATTCATTCAGGTTTTGGACAAGGAACTATAATGGACCTTGATGGTGGGATGGGTCATAGAAAACACTCAAGGAAGGAGAAGAAAAAGTTACTACTTGCTGATGCTAATATATCAGCTGTGGAGAAAGAAGGGTCTGAATCAACATTTGCTGACTATTCTGCTGCACCTGCATTTCCAACTAATAACCAACTTGAAATGGTCAAGTTGACAAAAAGAAATTCAACTTGTACTGTGGCACCTATACTGGATGATGGTACAGGAGTCTGTTCTGGTGTTGTAGACCATGCAGCTAGTCTCATACATCCTTCGACAAAGCGGTCCAAATTGATAACTGGTGAAGGGCTGTTACTGGCATCTGATTTAGAACCATCGTCAGCTAAAACAAAAATTAGAAATGTTCCGATTCCCCTTGCAAGTAAAATATATTACTCTCAGAGAAATAATCGTCTGCGCTCGGCTCTTGGTTATCTTTACTGGGAGGCTGTTGCATCTAGCAAGGAAATTTGTAATATGGTGGATCATCAAATAACAAAGGAAGATATAAAACAATTTCACAATACTTCCCAGGAGGAGTCGTCTCAAGAACAAACAAGTGACATTATTGGAAAGAAGATGGATAGTCAGTCCTTAACCTCTGCATGGAAATCTGACCATAATCTGGCCATATTCTCATCTGGCAAATGTCTGCCTGCCGGTGGTGCCTCAAATAAGTTTGTTATTGGCAGCAGTGTCGCATGGCCGCAGATTGCTCCAGATAGACTAGACAACAGCCAAGTGGAAGTATTCCTGTTGTATAGAAGTCTTGGTGGCACTTTTTTTGTAGGCACAGTGGTACATGTAATTAACCCTAAAACTTGA 2520 42.5 MRAGGKIVQTTERERGRETRVAIVTILRNQKHFYSIFSLLSLLPFSASISTHFPLPIFSSDLSNKLLTHPPLFPLLCLLAQVRIQSPNRFNWKSIVNSAVRVMTMELFEVQPAELKFTFELKKQSSCLIQLINKSEQHVAFKVKTTSPKKYCVRPNTGIIKPKDTCDFTVTMLAQRTAPPDMQCKDKFLVQGTVISPGTSEEDITSDVFAKDSGKHIEEKKLKVFLVSATPPPVLLPINGELKLDSNHETSMPRDRMQTGVENIPPPHKVAEDSNGLDTCKHIDELRTVDTPELLSPPYKVAEGVEKIDSCKDSGENRAAVDVSTRQNEDVVAKPSENIETTPAEGIEESKLAKDLPELNLTKDFQELKSKLTLMDAELLEAEATIMRLKKERMITTQEREMLKRDLSSSWILHPSLAEAEQINGGSITAVDSNFSAFSLVSCAWMIGGAFVLRCRTSSFPYIIHLLSLNVGNGRMAVMTRLLAAGSFSRTIAEEVGHQKFASEFICRELRDADEANLIDEEDMHVFGLKPMVDPLNLVCCNICKKPVKASQYIIHSGFGQGTIMDLDGGMGHRKHSRKEKKKLLLADANISAVEKEGSESTFADYSAAPAFPTNNQLEMVKLTKRNSTCTVAPILDDGTGVCSGVVDHAASLIHPSTKRSKLITGEGLLLASDLEPSSAKTKIRNVPIPLASKIYYSQRNNRLRSALGYLYWEAVASSKEICNMVDHQITKEDIKQFHNTSQEESSQEQTSDIIGKKMDSQSLTSAWKSDHNLAIFSSGKCLPAGGASNKFVIGSSVAWPQIAPDRLDNSQVEVFLLYRSLGGTFFVGTVVHVINPKT 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5652798 5670848 + ClCG05G005770.1 Cla05g00611 272101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00611 839 PANTHER VESICLE-ASSOCIATED MEMBRANE-PROTEIN-ASSOCIATED PROTEIN-RELATED 103 407 - -
Cla05g00611 839 Coils Coil 365 406 - -
Cla05g00611 839 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 103 407 IPR016763 GO:0005789
Cla05g00611 839 ProSiteProfiles Major sperm protein (MSP) domain profile. 107 227 IPR000535 -
Cla05g00611 839 Gene3D Immunoglobulins 102 229 IPR013783 -
Cla05g00611 839 Pfam MSP (Major sperm protein) domain 109 211 IPR000535 -
Cla05g00611 839 SUPERFAMILY PapD-like 107 235 IPR008962 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00611 - - - bhj:120087804 573.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01588 Cla-Chr3:31676192 Cla05g00611 Cla-Chr5:5652798 6.75E-40 dispersed
Cla03g01591 Cla-Chr3:31692475 Cla05g00611 Cla-Chr5:5652798 1.86E-46 dispersed
Cla05g00611 Cla-Chr5:5652798 Cla10g00219 Cla-Chr10:2561885 6.68E-43 dispersed
Cla05g00611 Cla-Chr5:5652798 Cla02g01595 Cla-Chr2:30649990 6.12E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g366 . . . . . . . . . . Cma06g01462 Cma14g01646 . Car14g01479 Sed12g0869 Cpe08g00217 Cpe03g01390 Bhi01g00933 Tan10g0945 Cmetu06g0148 . . . . . . . . . . . Cone14ag0787 Cone15ag0788 . . Lsi05g01498 . . . . . . . . . . . . Cmo06g01462 Cmo14g01690 . . . . . . . . . . . . . Cla05g00611 Cam05g0671 Cec05g0681 Cco05g0675 Clacu05g0666 Cmu05g0634 Cre05g0704 . Csa03g01410 Chy06g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003314 0 13 1 0 0 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00611 Cla_Chr05 FPKM 6.794466 6.62831 9.496003 10.287222 27.63575 20.253094 24.653131 9.307551 9.986877 8.925903