Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00612 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGTGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGGTAAGCTTCCATCACCGGAGCAATTTGCTTGGCGCTACTTTTCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCGTGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGAGAGGCTAATATGGTTCGTAATTATATTACTTGCAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCAAATCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCAGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1242 45.65 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSGKLPSPEQFAWRYFSLADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPRAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSREANMVRNYITCRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPNRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5680576 5683632 + ClCG05G005780.2 Cla05g00612 272102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00612 413 SUPERFAMILY Tubby C-terminal domain-like 84 413 IPR025659 -
Cla05g00612 413 Gene3D Tubby Protein; Chain A 95 407 IPR025659 -
Cla05g00612 413 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Cla05g00612 413 Pfam F-box domain 38 82 IPR001810 GO:0005515
Cla05g00612 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 413 - -
Cla05g00612 413 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515
Cla05g00612 413 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cla05g00612 413 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Cla05g00612 413 Pfam Tub family 96 408 IPR000007 -
Cla05g00612 413 PANTHER TUBBY-RELATED 1 413 - -
Cla05g00612 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00612 K19600 TUB, TULP; tubby and related proteins - csv:101217713 750.355
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00612 Cla06g00505 CCT
Cla05g00612 Cla06g00505 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00612 Cla-Chr5:5680576 Cla08g00355 Cla-Chr8:8941658 1.37E-150 dispersed
Cla05g00612 Cla-Chr5:5680576 Cla06g00505 Cla-Chr6:6119251 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00355 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 7.2e-178 620.5
Cla08g00713 . 1 452 TUB Transcription Factor Family AT1G76900 65.8 7.0e-165 577.4
Cla05g01062 . 1 494 TUB Transcription Factor Family AT1G76900 60.9 5.2e-160 561.2
Cla06g00505 CCT,ECH 13 386 TUB Transcription Factor Family AT1G76900 50.9 1.1e-114 410.6
Cla05g01062 . 240 494 TUB Transcription Factor Family AT1G25280 74.3 8.4e-102 367.1
Cla08g00355 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.9e-94 341.3
Cla08g00713 . 195 452 TUB Transcription Factor Family AT1G25280 70.0 2.1e-92 335.9
Cla06g00505 CCT,ECH 154 386 TUB Transcription Factor Family AT1G25280 53.9 1.4e-67 253.4
Cla05g00612 CCT,ECH 168 413 TUB Transcription Factor Family AT1G25280 51.3 2.3e-67 252.7
Cla05g01926 . 340 567 TUB Transcription Factor Family AT1G25280 53.8 1.5e-66 250.0
Cla01g01915 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 1.2e-63 240.4
Cla06g00505 CCT,ECH 98 386 TUB Transcription Factor Family AT5G18680 62.8 1.1e-99 360.1
Cla05g00612 CCT,ECH 98 413 TUB Transcription Factor Family AT5G18680 57.7 2.6e-91 332.4
Cla08g00355 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.9e-84 308.5
Cla08g00713 . 129 452 TUB Transcription Factor Family AT5G18680 50.3 7.4e-83 304.3
Cla01g01915 . 1 413 TUB Transcription Factor Family AT2G18280 61.3 1.7e-138 489.6
Cla05g01926 . 107 567 TUB Transcription Factor Family AT2G18280 52.3 1.5e-118 423.3
Cla08g00355 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.3e-116 416.0
Cla06g00505 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.5 3.1e-113 405.6
Cla05g00612 CCT,ECH 1 413 TUB Transcription Factor Family AT2G18280 51.0 8.6e-111 397.5
Cla06g00505 CCT,ECH 1 386 TUB Transcription Factor Family AT2G47900 68.5 4.6e-160 561.2
Cla05g00612 CCT,ECH 1 413 TUB Transcription Factor Family AT2G47900 64.4 1.2e-155 546.6
Cla08g00355 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.1e-132 470.3
Cla08g00713 . 1 452 TUB Transcription Factor Family AT2G47900 54.1 1.0e-127 453.8
Cla01g01915 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 2.9e-114 409.1
Cla07g00980 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 2.4e-100 362.8
Cla09g00311 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 9.0e-73 270.8
Cla08g00355 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.4e-147 519.6
Cla08g00713 . 65 452 TUB Transcription Factor Family AT1G43640 62.4 1.3e-137 486.5
Cla05g01062 . 66 494 TUB Transcription Factor Family AT1G43640 57.6 2.2e-137 485.7
Cla06g00505 CCT,ECH 49 386 TUB Transcription Factor Family AT1G43640 52.9 3.4e-106 382.1
Cla05g01926 . 140 567 TUB Transcription Factor Family AT1G47270 56.2 1.4e-126 449.9
Cla01g01915 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 3.1e-121 432.2
Cla08g00355 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 2.0e-112 402.9
Cla06g00505 CCT,ECH 1 386 TUB Transcription Factor Family AT1G47270 51.0 4.2e-110 395.2
Cla08g00713 . 48 452 TUB Transcription Factor Family AT1G47270 52.3 2.3e-108 389.4
Cla07g00980 . 50 383 TUB Transcription Factor Family AT1G53320 76.8 9.6e-152 533.5
Cla06g00505 CCT,ECH 98 386 TUB Transcription Factor Family AT3G06380 62.1 3.7e-95 345.1
Cla05g00612 CCT,ECH 98 413 TUB Transcription Factor Family AT3G06380 58.9 8.5e-92 334.0
Cla08g00713 . 132 452 TUB Transcription Factor Family AT3G06380 51.4 8.8e-81 297.4
Cla08g00355 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.4e-80 295.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61027 PF01167 Tub 1.60E-102 CL0395 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00612 Cla_Chr05 FPKM 44.119087 42.341743 17.98509 18.112219 16.765871 15.71626 14.551824 202.238907 201.000748 198.114014