Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00613 ATGGGGTGTGTTTTTGGGCGAGAGGTATCTGAGAATCCCGTCCAGAAAGAAGAGGAGGAGGAGAGACAGAAGGCGGAGGAGGAAATTAGGGTTTCTGTCAAACCGGAGGTTTCTCAGGTTCAGGCTAATAATGCTCGCAATGGTGGAAGTAGGAAGGAGGTTGAAAATGACAGAGGTTCGAGGCAGAGAAGTGAGCGGCGGCGAAGGCCGAATCCGAGATCGAGTAATCCGCCGAAACATGTGCATGGCGAGCAAGTCGCCGCTGGATGGCCTTCTTGGCTTTCCGCCGTCGCCGGTGAGGCTATCAACGGATGGATTCCACGCCGTGCCGACTCTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACATATAGTAATGTGTACAAAGCAAGGGACACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGATTTATGGCCCGAGAAATTCTCATCCTGCGACGTCTGGATCATCCCAATGTTGTAAAACTCGAAGGTTTAGTGACGTCCCGGATGTCTTGTAGTTTATATCTTGTATTTGAATACATGGAGCACGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACAGAACCACAGGTTAAATGCTACATGCACCAATTGTTATCAGGGCTCGAACACTGTCATAATCGTCATGTCCTGCATCGAGATATAAAGGGATCGAATCTTCTGATTGGTAACGATGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCCGGAAAACCTATCATGCCCGGTCGCACAGAGGTAAAGCTCTTTACTAGTCCATCTTTCTTTCTGCCTTCAGTTCATCAACTGGGGGTTTTGGTTGAGCAGCTGCATAAGATATTTAAGTTATGTGGCTCTCCTACAGACGAATACTGGAAAAAGTCAAGGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATAGCAGAGACATTTAAAGATTTCCCACCATCGTCTCTGCCACTAATTGAGACACTTCTTGCAATCGACCCAGCTGAACGCCTGACCGCCACCGCTGCATTACATAGTGAATTTTTCACTACCAAACCATATGCTTGTGAACCTTCCAGCCTCCCTAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTCCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGTAGATGGGGTGAAAAAATCACGGGCACGTGATAGAGCTGTTCGTGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGGCGACGTCTCATAACACACGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCACTTGGCTACCCGCTCGGATCTTCGCATCATATTGATCCAATCTACGATCCTCCTGACGTTCCATTTAGCACAATGAATTTCTCGTATCCAAAAGCAAACATTCACACATGGTCTGGTCCTTTGATGGATCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGCGACGGGCATTCATCAAAATCATCTAAAGACTTACGAAAAGATAAAAATTCAGTTCGGATCTAA 1776 46.85 MGCVFGREVSENPVQKEEEEERQKAEEEIRVSVKPEVSQVQANNARNGGSRKEVENDRGSRQRSERRRRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVKLFTSPSFFLPSVHQLGVLVEQLHKIFKLCGSPTDEYWKKSRLPHATIFKPQHSYKRCIAETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNVDGVKKSRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHIDPIYDPPDVPFSTMNFSYPKANIHTWSGPLMDPAAVGAPRRKKHTAGDGHSSKSSKDLRKDKNSVRI 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5686445 5690930 - ClCG05G005790.1 Cla05g00613 272103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00613 591 SMART serkin_6 113 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00613 591 Gene3D Transferase(Phosphotransferase) domain 1 196 456 - -
Cla05g00613 591 MobiDBLite consensus disorder prediction 497 518 - -
Cla05g00613 591 MobiDBLite consensus disorder prediction 1 85 - -
Cla05g00613 591 PANTHER CELL DIVISION PROTEIN KINASE 56 321 - -
Cla05g00613 591 PANTHER CELL DIVISION PROTEIN KINASE 340 573 - -
Cla05g00613 591 ProSiteProfiles Protein kinase domain profile. 113 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00613 591 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Cla05g00613 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Cla05g00613 591 Pfam Protein kinase domain 113 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00613 591 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Cla05g00613 591 PANTHER OS01G0367700 PROTEIN 56 321 - -
Cla05g00613 591 PANTHER OS01G0367700 PROTEIN 340 573 - -
Cla05g00613 591 SUPERFAMILY Protein kinase-like (PK-like) 106 422 IPR011009 -
Cla05g00613 591 MobiDBLite consensus disorder prediction 11 33 - -
Cla05g00613 591 MobiDBLite consensus disorder prediction 552 591 - -
Cla05g00613 591 MobiDBLite consensus disorder prediction 50 72 - -
Cla05g00613 591 CDD STKc_CDK9_like 113 417 - -
Cla05g00613 591 MobiDBLite consensus disorder prediction 561 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00613 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101217952 1070.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01601 Cla-Chr2:30730677 Cla05g00613 Cla-Chr5:5686445 0 dispersed
Cla03g00375 Cla-Chr3:4339570 Cla05g00613 Cla-Chr5:5686445 0 dispersed
Cla05g00613 Cla-Chr5:5686445 Cla05g01008 Cla-Chr5:10158398 0 dispersed
Cla08g00325 Cla-Chr8:7581863 Cla05g00613 Cla-Chr5:5686445 2.60E-147 dispersed
Cla10g01343 Cla-Chr10:28417520 Cla05g00613 Cla-Chr5:5686445 6.50E-19 dispersed
Cla05g00613 Cla-Chr5:5686445 Cla03g01582 Cla-Chr3:31590266 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g361 . . . . . Bpe14g01150 . . . . Cma06g01464 Cma14g01644 Car06g01263 Car14g01474 . Cpe08g00215 Cpe03g01388 Bhi01g00949 . . . . . . . . . . . . . . . Cone7ag0178 Cone4ag0174 Lsi05g01501 . . Cme06g00688 Blo02g00578 Blo07g00189 . . . Bpe13g00648 . . . Cmo06g01464 Cmo14g01688 . . . . . . . . . . . . . Cla05g00613 Cam05g0674 Cec05g0684 Cco05g0679 Clacu05g0668 Cmu05g0636 Cre05g0708 . Csa03g01412 Chy06g00655 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000603 3 3 4 2 3 3 5 2 2 3 3 3 5 3 3 5 2 4 5 2 3 3 3 3 3 3 3 3 1 2 92
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80545 PF00069 Pkinase 3.20E-65 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00613 Cla_Chr05 FPKM 0.410828 0.0 4.079977 2.337369 21.224796 23.755217 20.130951 1.096086 1.333406 0.800411