Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g00626 | ATGGGTGGGTGTTTTCCTTGTTTTGGATCCTCCGATGAAGATGGTAATGGTGTGAAAGAAGCTACTAAGAAGGATTCAGCCAAGGATGGCTCCACCGCTCAGTCTCACCATGTTAGAAGAGTGAGCTCAGATAAATCGAAGTCACGGAGTGTATCTGATGCTAAGAAGGAGCCAACTGTTCAAAAGGATGGAACAACAGCACATATTGCTGCTCAAACATTTACATTCCGGGAGCTTGCTACAGCGACGAAGAACTTTAGATCAGAATGCTTGCTCGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCGCTTGGAGAGCACAGGACAGGTAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAATTTTTGGTGGAGGTTCTAATGCTTAGCCTGTTACATCACCCTAATCTTGTTAACTTGATAGGCTATTGTGCTGACGGGGATCAACGTCTTCTTGTTTATGAGTTCATGCCATTGGGTTCATTGGAAGATCATTTGCATGACCTTCCTCCAGATAAGGAGCCCTTGGATTGGAATACGAGAATGAAGATTGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGACAAAGCAAACCCGCCTGTTATATATCGAGACTTGAAGTCGTCTAATATTCTTCTTGACGAGGGCTACCACCCCAAGCTGTCAGATTTCGGTCTTGCAAAACTGGGTCCAGTTGGTGACAAGACTCATGTCTCTACGAGAGTGATGGGAACATACGGTTACTGTGCTCCTGAGTATGCTATGACTGGCCAACTCACTCTCAAATCAGATGTATATAGTTTTGGAGTTGTCTTTTTGGAACTTATCACGGGTCGCAAGGCAATCGATAATACTAGAGGTCCAGGGGAGCATAATCTTGTGGCATGGGCTCGGCCACTTTTTAAAGATCGCCGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAGGGTCGATATCCCATGCGGGGACTTTATCAGGCATTGGCAGTTGCAGCAATGTGCTTACAGGAACAGGCTGCAACGAGACCTCTAATTGGGGATGTTGTTACTGCTTTGACGTATTTAGCTTCCCAAACTTACGATCCTAATGCAGCTGCTTCTCAAAGCAATCGAATGGGTGGATCTACCCCACGAGCCCGAGATGAGCGGAGAGGTTTTCCAGATGGACTGGATAGCCCTGATGAGCGTGGACGAGGACGTGGTTCCCCATCGAACTACAGAAACTCACCTGATTACCGAAAGAAAGACCTCCATAGGGAAATGAGTTGTGGAGGTACAGAGCTGAGCAAAATCGACACTGGAGGCGGATCTGGTCGAAAATGGGGATTGGATGAGCTAGAGCGACAAGAATCTCTGCGAGACAGTCCTGTATATACTGGGAGAGCAAGGGAAACACCAAGGAACCGCGACCTAAACAGAGAACGTGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAACTGGAGAGAAAGAAAGCGGGCAAACGCGCAAGGCAGCTTTGACGGTTCACAAGAATGA | 1539 | 47.43 | MGGCFPCFGSSDEDGNGVKEATKKDSAKDGSTAQSHHVRRVSSDKSKSRSVSDAKKEPTVQKDGTTAHIAAQTFTFRELATATKNFRSECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAASQSNRMGGSTPRARDERRGFPDGLDSPDERGRGRGSPSNYRNSPDYRKKDLHREMSCGGTELSKIDTGGGSGRKWGLDELERQESLRDSPVYTGRARETPRNRDLNRERAVAEAKVWGENWRERKRANAQGSFDGSQE | 512 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 5770602 | 5775053 | - | ClCG05G005900.1 | Cla05g00626 | 272116 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g00626 | 512 | ProSiteProfiles | Protein kinase domain profile. | 86 | 363 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla05g00626 | 512 | MobiDBLite | consensus disorder prediction | 417 | 433 | - | - | |
| Cla05g00626 | 512 | MobiDBLite | consensus disorder prediction | 372 | 481 | - | - | |
| Cla05g00626 | 512 | Gene3D | Transferase(Phosphotransferase) domain 1 | 163 | 381 | - | - | |
| Cla05g00626 | 512 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL27 | 1 | 506 | - | - | |
| Cla05g00626 | 512 | Gene3D | Phosphorylase Kinase; domain 1 | 56 | 162 | - | - | |
| Cla05g00626 | 512 | CDD | STKc_IRAK | 92 | 361 | - | - | |
| Cla05g00626 | 512 | MobiDBLite | consensus disorder prediction | 384 | 409 | - | - | |
| Cla05g00626 | 512 | PANTHER | OS07G0668900 PROTEIN | 1 | 506 | - | - | |
| Cla05g00626 | 512 | SMART | serkin_6 | 86 | 363 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla05g00626 | 512 | MobiDBLite | consensus disorder prediction | 16 | 62 | - | - | |
| Cla05g00626 | 512 | Pfam | Protein kinase domain | 90 | 297 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cla05g00626 | 512 | SUPERFAMILY | Protein kinase-like (PK-like) | 68 | 360 | IPR011009 | - | |
| Cla05g00626 | 512 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
| Cla05g00626 | 512 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 209 | 221 | IPR008271 | GO:0004672|GO:0006468 | |
| Cla05g00626 | 512 | ProSitePatterns | Protein kinases ATP-binding region signature. | 92 | 115 | IPR017441 | GO:0005524 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01354 | Cla-Chr2:27804754 | Cla05g00626 | Cla-Chr5:5770602 | 0 | dispersed | |
| Cla05g00626 | Cla-Chr5:5770602 | Cla10g01964 | Cla-Chr10:35470374 | 0 | dispersed | |
| Cla10g01096 | Cla-Chr10:25170630 | Cla05g00626 | Cla-Chr5:5770602 | 2.56E-101 | dispersed | |
| Cla03g01091 | Cla-Chr3:21820415 | Cla05g00626 | Cla-Chr5:5770602 | 9.66E-162 | transposed | |
| Cla06g00172 | Cla-Chr6:2009391 | Cla05g00626 | Cla-Chr5:5770602 | 8.69E-169 | transposed | |
| Cla09g00842 | Cla-Chr9:8661899 | Cla05g00626 | Cla-Chr5:5770602 | 6.03E-175 | transposed | |
| Cla09g00999 | Cla-Chr9:10519636 | Cla05g00626 | Cla-Chr5:5770602 | 2.62E-91 | transposed | |
| Cla10g00517 | Cla-Chr10:6839670 | Cla05g00626 | Cla-Chr5:5770602 | 2.28E-177 | transposed | |
| Cla10g01256 | Cla-Chr10:27421745 | Cla05g00626 | Cla-Chr5:5770602 | 1.47E-94 | transposed | |
| Cla11g01825 | Cla-Chr11:31921672 | Cla05g00626 | Cla-Chr5:5770602 | 2.04E-168 | transposed | |
| Cla03g01614 | Cla-Chr3:32011279 | Cla05g00626 | Cla-Chr5:5770602 | 1.41E-99 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 80546 | PF00069 | Pkinase | 7.70E-46 | CL0016 | Cla | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g00626 | - | - | csv:101207561 | 1019.61 |