Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00626 ATGGGTGGGTGTTTTCCTTGTTTTGGATCCTCCGATGAAGATGGTAATGGTGTGAAAGAAGCTACTAAGAAGGATTCAGCCAAGGATGGCTCCACCGCTCAGTCTCACCATGTTAGAAGAGTGAGCTCAGATAAATCGAAGTCACGGAGTGTATCTGATGCTAAGAAGGAGCCAACTGTTCAAAAGGATGGAACAACAGCACATATTGCTGCTCAAACATTTACATTCCGGGAGCTTGCTACAGCGACGAAGAACTTTAGATCAGAATGCTTGCTCGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCGCTTGGAGAGCACAGGACAGGTAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAATTTTTGGTGGAGGTTCTAATGCTTAGCCTGTTACATCACCCTAATCTTGTTAACTTGATAGGCTATTGTGCTGACGGGGATCAACGTCTTCTTGTTTATGAGTTCATGCCATTGGGTTCATTGGAAGATCATTTGCATGACCTTCCTCCAGATAAGGAGCCCTTGGATTGGAATACGAGAATGAAGATTGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGACAAAGCAAACCCGCCTGTTATATATCGAGACTTGAAGTCGTCTAATATTCTTCTTGACGAGGGCTACCACCCCAAGCTGTCAGATTTCGGTCTTGCAAAACTGGGTCCAGTTGGTGACAAGACTCATGTCTCTACGAGAGTGATGGGAACATACGGTTACTGTGCTCCTGAGTATGCTATGACTGGCCAACTCACTCTCAAATCAGATGTATATAGTTTTGGAGTTGTCTTTTTGGAACTTATCACGGGTCGCAAGGCAATCGATAATACTAGAGGTCCAGGGGAGCATAATCTTGTGGCATGGGCTCGGCCACTTTTTAAAGATCGCCGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAGGGTCGATATCCCATGCGGGGACTTTATCAGGCATTGGCAGTTGCAGCAATGTGCTTACAGGAACAGGCTGCAACGAGACCTCTAATTGGGGATGTTGTTACTGCTTTGACGTATTTAGCTTCCCAAACTTACGATCCTAATGCAGCTGCTTCTCAAAGCAATCGAATGGGTGGATCTACCCCACGAGCCCGAGATGAGCGGAGAGGTTTTCCAGATGGACTGGATAGCCCTGATGAGCGTGGACGAGGACGTGGTTCCCCATCGAACTACAGAAACTCACCTGATTACCGAAAGAAAGACCTCCATAGGGAAATGAGTTGTGGAGGTACAGAGCTGAGCAAAATCGACACTGGAGGCGGATCTGGTCGAAAATGGGGATTGGATGAGCTAGAGCGACAAGAATCTCTGCGAGACAGTCCTGTATATACTGGGAGAGCAAGGGAAACACCAAGGAACCGCGACCTAAACAGAGAACGTGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAACTGGAGAGAAAGAAAGCGGGCAAACGCGCAAGGCAGCTTTGACGGTTCACAAGAATGA 1539 47.43 MGGCFPCFGSSDEDGNGVKEATKKDSAKDGSTAQSHHVRRVSSDKSKSRSVSDAKKEPTVQKDGTTAHIAAQTFTFRELATATKNFRSECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAASQSNRMGGSTPRARDERRGFPDGLDSPDERGRGRGSPSNYRNSPDYRKKDLHREMSCGGTELSKIDTGGGSGRKWGLDELERQESLRDSPVYTGRARETPRNRDLNRERAVAEAKVWGENWRERKRANAQGSFDGSQE 512
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 5770602 5775053 - ClCG05G005900.1 Cla05g00626 272116
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00626 512 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00626 512 MobiDBLite consensus disorder prediction 417 433 - -
Cla05g00626 512 MobiDBLite consensus disorder prediction 372 481 - -
Cla05g00626 512 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
Cla05g00626 512 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 506 - -
Cla05g00626 512 Gene3D Phosphorylase Kinase; domain 1 56 162 - -
Cla05g00626 512 CDD STKc_IRAK 92 361 - -
Cla05g00626 512 MobiDBLite consensus disorder prediction 384 409 - -
Cla05g00626 512 PANTHER OS07G0668900 PROTEIN 1 506 - -
Cla05g00626 512 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00626 512 MobiDBLite consensus disorder prediction 16 62 - -
Cla05g00626 512 Pfam Protein kinase domain 90 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00626 512 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Cla05g00626 512 MobiDBLite consensus disorder prediction 1 64 - -
Cla05g00626 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Cla05g00626 512 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01354 Cla-Chr2:27804754 Cla05g00626 Cla-Chr5:5770602 0 dispersed
Cla05g00626 Cla-Chr5:5770602 Cla10g01964 Cla-Chr10:35470374 0 dispersed
Cla10g01096 Cla-Chr10:25170630 Cla05g00626 Cla-Chr5:5770602 2.56E-101 dispersed
Cla03g01091 Cla-Chr3:21820415 Cla05g00626 Cla-Chr5:5770602 9.66E-162 transposed
Cla06g00172 Cla-Chr6:2009391 Cla05g00626 Cla-Chr5:5770602 8.69E-169 transposed
Cla09g00842 Cla-Chr9:8661899 Cla05g00626 Cla-Chr5:5770602 6.03E-175 transposed
Cla09g00999 Cla-Chr9:10519636 Cla05g00626 Cla-Chr5:5770602 2.62E-91 transposed
Cla10g00517 Cla-Chr10:6839670 Cla05g00626 Cla-Chr5:5770602 2.28E-177 transposed
Cla10g01256 Cla-Chr10:27421745 Cla05g00626 Cla-Chr5:5770602 1.47E-94 transposed
Cla11g01825 Cla-Chr11:31921672 Cla05g00626 Cla-Chr5:5770602 2.04E-168 transposed
Cla03g01614 Cla-Chr3:32011279 Cla05g00626 Cla-Chr5:5770602 1.41E-99 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80546 PF00069 Pkinase 7.70E-46 CL0016 Cla PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00626 - - csv:101207561 1019.61