Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00627 ATGGAACGGATAGCGAAGGTTGCGTCACAGAAGGCGGTGGTGATATTCAGCAAGAGCTCATGCTGCATGAGCCATGCAATCAAGAGACTGTTCTACGACCAAGGCGTGAGCCCGGCCGTGTACGAGCTGGACGAGGACTCGAGAGGTAAAGAAATTGAATGGGCCCTTTTACGCTTGGGCTGCAACCCCGCAGTCCCCGCCGTGTTCATCGGCGGTCGCTTCGTGGGCTCCGCGAATGCTATCATCACCCTTCATCTCAATGGGTGCCTCAACAAATTGCTCAAAGAAGCAGGAGCTCTGTGGCTTTGA 309 55.02 MERIAKVASQKAVVIFSKSSCCMSHAIKRLFYDQGVSPAVYELDEDSRGKEIEWALLRLGCNPAVPAVFIGGRFVGSANAIITLHLNGCLNKLLKEAGALWL 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5794133 5794441 - ClCG05G005905.1 Cla05g00627 272117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00627 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
Cla05g00627 102 Pfam Glutaredoxin 13 75 IPR002109 -
Cla05g00627 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Cla05g00627 102 TIGRFAM GlrX-like_plant: glutaredoxin-like family 5 102 IPR011905 -
Cla05g00627 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
Cla05g00627 102 Gene3D Glutaredoxin 1 101 - -
Cla05g00627 102 CDD GRX_GRXh_1_2_like 12 93 - -
Cla05g00627 102 PANTHER MONOTHIOL GLUTAREDOXIN-S10 1 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00627 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101220094 207.223
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00627 Cla06g00497 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00627 Cla-Chr5:5794133 Cla06g00498 Cla-Chr6:6038651 2.38E-51 dispersed
Cla05g00627 Cla-Chr5:5794133 Cla06g00497 Cla-Chr6:6023780 2.12E-43 wgd
Cla05g00627 Cla-Chr5:5794133 Cla09g00582 Cla-Chr9:5438275 5.32E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g347 . . . . . . . . Cmo08g01184 . Cma06g01477 . . . Sed09g0224 Cpe08g00205 . Bhi01g00967 Tan10g0969 Cmetu11g0167 . . . Lcy11g1438 Cla06g00497 Cam06g0534 Cec06g0534 Cco06g0538 Clacu06g0519 Cmu06g0521 Cre06g1291 Cone14ag0776 . . Cone4ag0166 Lsi05g01514 . Chy11g01481 Cme06g00704 . . Bda11g00537 . . Bpe13g00651 . Bma06g01515 Sed07g0377 . . Cma08g01211 Cma17g00312 . . Cpe12g00263 Cpe17g00007 Bhi12g02090 Tan06g0868 Cmetu01g1682 Lac12g2385 Hepe03g0120 . Lcy13g0195 Cla05g00627 Cam05g0687 Cec05g0696 Cco05g0693 Clacu05g0681 Cmu05g0649 Cre05g0720 Lsi09g01408 Csa03g01428 Chy06g00668 Cme11g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000678 3 2 1 3 3 3 2 2 3 4 3 3 5 3 3 4 3 7 6 3 3 4 3 3 2 3 4 4 6 1 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00627 Cla_Chr05 FPKM 9.421133 5.445716 6.151068 11.521871 2.064696 1.21954 1.30353 30.512121 28.548418 25.209593