Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00628 ATGAAAATGTTCGGGTTTCGAAGGCGAATGAAGCTTGGAAGTAGGTTGAAAGTCCAGCTTTCGGATCCTGCTCAGGGAACTAGGAGTCCTATAAGACAACCCAAACGAGGGAGCAGCTCTAATAGTGAATGTGCTGCGCCCGCAAGTAGGCATTCTGAAGAGCATGATGATGGGCTACGAGTTTCTGACGATCCTGATATTAGTAATAATGGTGCTTCGGGACAGTCTGAGAATTGGATGGTCTTGTCAATTGCAGGGGAAAAACCAGCTCCTCGTTTCAATCATGCCGCAACTGTGATTGGAAATAAGATGATTGTTGTTGGTGGTGAATGTGGGAATGGATTATTAGATGATGTACAGGTACTTAATTTTGATAAATTTACTTGGAGCAGAGCCTCATCAAAGCTTTACCTATCACCTAGTTCATTGCCATTGAAGATCCCTGCTTGCAAGGGTCACAGCCTGTGTGATGACTCCCTCTTTATGGCATCTACTTTTGTTCAACTTGCATCTCTAAAAGATATTTGTGCTTGTTTTCTAAGGTTTCTTGGGGGAAGAAAGCCCTCTTGGTTGGGGGTAAGACAGAGCCAGGAAATGAGAGAGTGGCAGCTAACCTTTGTGGTGGTTGCAGTGTGGGCATTTGACACAGAGACAGAATGTTGGTCGCTGATGGAAGCAAAGGGAGATATACCTGTTGCTAGAAGTGGTCACACTGTAGTTAGAGCTAGCTCTGTTTTAATCCTTTTTGGAGGTGAAGATAGACCATCTGCGAGATCCAACCATGTGGCAGCTCTTTATGATGATAAAACTCTGCTTATATTTGGAGGGACATCGAAATCCCGGACCCTGAATGATTTATATTCACTTGACTTCGAAACAATGGTATGGTCAAGAATAAAGGTACGGGGTTTCCATCCATCACCTAGAGCTGGTTGCTGTGGCGTTCTCTGTGGAACTAAATGGTGCATAGCAGGGGGTGGAAGCAGGAAAAAGAGACATGCGGATACTCTAATCTTTGATGTACTGAAACTTGAGTGGTCTGTTGCTGTCATATCACCTCCATCTTCTGTCACCACTAACAAGCACAAAGAGAAGGATTTTCTTCTTGCATTTGGGGGATCCAAAAAGGAGCCATCAAATCAGGTTGAAGTATTGACCATGGAAAAGAAGGAACCATCTTTGAGGCACCGATCCAATCCCATTGACTCAACTGCTAGACAAAATCTAGCATCTGCTATTGAACATGGCTCTGGAAGAAAATCCATTTCAGAGACCTCACTTGTCGATCCGAATCCTATTCCTGGAAATATTTCACTCCGCAAGCAATTTCATAACGATGAAGCCTTTGAAAAAACTACTAAAATAGCCAAGACTCCAGAAGATGATTCCTCCACTTCTCAGGTAACAGAGAACAAGTTGACCCAATCTGGGGGTGAATTCCATGGGGAGGCACTGCCTTCCGTATACGAGTACGAAAGCTCAAATCCCTTCAAGGAAGGAGTTGGATATCATCCCATTGATAACACTGATCTATTCAGCGAAAACAGTGGTAAAATAGTAACATCATCTACTTTTTCAAGTATATATCAATTCTATGAAGCGAAAATGGCGGCCTTAATTAGAAAGAACGGAGTTCTGGAAGGGCAACTAGCAGCATCAATGGCGAGCCGAGAAGCTGTTGAGAAAAATTTATCCTCTGCTCTAAAGATCCGGCAGGAGATGGAGAAAAGAATAGCTGATATGATAAAGGAGATGGAAATGCTGAGAGATAAGCTAGCAGGAGTAGAAATAGCAAAAGAAGAGGCTAATAGTCTGTCAAATATCGTCCACTCTGACAATGTACGCCTTGAACATGATGTTGCTTTTCTCAAAGCAGTTTTGGATGACACTCAAAAGGAGCTTCACTCTACTAGGGGAGTCCTTGCTGGAGAAAGATCTAGGGCCTTCCAACTACAGGAGCACATTCATCATACGTTTTATTTTGATTATGTTCCAAACTTAGGCTACGGTTTCATGCTTCAACTAGATATGTTCATTTTTCCTGGGGGATGGGGCCCTGTGGGGACCCACCTCGAACGGAGCAGAGATTTCCCGTTTAGAAAGGGAATGGGGAGGGAGTTGAGTCCCGCGAGGCAAATAGGGACGGGGATGGGGACAAAGACAAAAAATTGCATTTTCCACCCCCACCCCGTTAGCCTAGGGTTGGCAACGGGGCCGAGGCAGGGTGGGTGGGGGGTCCCCGTCCCCGCCCTCGTTCCCCTATCTTCGCCCGGCGGTGACCCCATTCCCCACGAGTACTTGAGATAG 2307 45.17 MKMFGFRRRMKLGSRLKVQLSDPAQGTRSPIRQPKRGSSSNSECAAPASRHSEEHDDGLRVSDDPDISNNGASGQSENWMVLSIAGEKPAPRFNHAATVIGNKMIVVGGECGNGLLDDVQVLNFDKFTWSRASSKLYLSPSSLPLKIPACKGHSLCDDSLFMASTFVQLASLKDICACFLRFLGGRKPSWLGVRQSQEMREWQLTFVVVAVWAFDTETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDRPSARSNHVAALYDDKTLLIFGGTSKSRTLNDLYSLDFETMVWSRIKVRGFHPSPRAGCCGVLCGTKWCIAGGGSRKKRHADTLIFDVLKLEWSVAVISPPSSVTTNKHKEKDFLLAFGGSKKEPSNQVEVLTMEKKEPSLRHRSNPIDSTARQNLASAIEHGSGRKSISETSLVDPNPIPGNISLRKQFHNDEAFEKTTKIAKTPEDDSSTSQVTENKLTQSGGEFHGEALPSVYEYESSNPFKEGVGYHPIDNTDLFSENSGKIVTSSTFSSIYQFYEAKMAALIRKNGVLEGQLAASMASREAVEKNLSSALKIRQEMEKRIADMIKEMEMLRDKLAGVEIAKEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERSRAFQLQEHIHHTFYFDYVPNLGYGFMLQLDMFIFPGGWGPVGTHLERSRDFPFRKGMGRELSPARQIGTGMGTKTKNCIFHPHPVSLGLATGPRQGGWGVPVPALVPLSSPGGDPIPHEYLR 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5816800 5823148 + ClCG05G005910.1 Cla05g00628 272118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00628 768 Coils Coil 557 605 - -
Cla05g00628 768 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 3 156 - -
Cla05g00628 768 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 209 657 - -
Cla05g00628 768 SUPERFAMILY Kelch motif 81 136 IPR015915 GO:0005515
Cla05g00628 768 Coils Coil 613 633 - -
Cla05g00628 768 MobiDBLite consensus disorder prediction 413 434 - -
Cla05g00628 768 Pfam Galactose oxidase, central domain 257 305 - -
Cla05g00628 768 Gene3D - 195 422 IPR015915 GO:0005515
Cla05g00628 768 MobiDBLite consensus disorder prediction 418 432 - -
Cla05g00628 768 Pfam Kelch motif 91 134 IPR006652 GO:0005515
Cla05g00628 768 MobiDBLite consensus disorder prediction 48 63 - -
Cla05g00628 768 MobiDBLite consensus disorder prediction 20 47 - -
Cla05g00628 768 SUPERFAMILY Kelch motif 211 374 IPR015915 GO:0005515
Cla05g00628 768 Gene3D - 66 176 IPR015915 GO:0005515
Cla05g00628 768 MobiDBLite consensus disorder prediction 15 74 - -
Cla05g00628 768 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 3 156 - -
Cla05g00628 768 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 209 657 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00628 - - - bhj:120076871 1103.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00628 Cla-Chr5:5816800 Cla08g00803 Cla-Chr8:20429820 2.93E-06 dispersed
Cla05g00628 Cla-Chr5:5816800 Cla06g01533 Cla-Chr6:28888423 1.08E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g346 . . . . . Bpe14g01142 . . . . Cma06g01478 Cma14g01635 Car06g01272 Car14g01462 Sed02g1213 Cpe08g00204 Cpe03g01377 Bhi01g00968 Tan10g0971 Cmetu06g2006 . Hepe05g1470 . Lcy11g1437 . . . . . . . . . Cone7ag0168 Cone4ag0165 Lsi05g01515 . . Cme06g00705 Blo02g00587 . . Bda13g00168 . . . . . Cmo06g01475 Cmo14g01674 . . . . . . . . . . . . . Cla05g00628 Cam05g0688 Cec05g0697 Cco05g0694 Clacu05g0682 Cmu05g0650 Cre05g0721 . Csa03g01429 Chy06g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007218 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00628 Cla_Chr05 FPKM 42.559517 44.248814 0.589381 0.285575 0.030347 0.0 0.404422 0.217488 0.391862 0.093293