Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00630 ATGGCCGCCATCTCAATTTGCTTCGCTCCACAAGCTCTGGCACGGCCCAGAATTCGGAACCCTAGAAGCATACCATCGCCCAAGAAGCTTCGTGGGAACAATAAGCTCAATCGCAATAACGTCAAGATCAAAACCAATTCGAAGGAGTTGTCTTCCATTGGCGTTGAAGCCACCACTTACACTCGCCTCCCTCCCAGGGAAGACTTCGCTCTTCTTAACTTTGATTCTCCGTCTTTTAATTCTGCTTCTTCTTCGAAGGATTCGTCTGAGGTGAAGCTTTTGGATTCGGATGTTGCCATAATTGAGGAGGAAGATGATTTGGATTCTTTGAACTGTGAAGAGCGGGAGGAAGAAGGGGAGGGAGGATTGGATGCTCTGGCACGGCCCAGAATTCGGAACCCTAGAAGCATACCATCGCCCAAGAAGCTTCGTGGGAACAATAAGCTCAATCGCAATAACGTCAAGATCAAAACCAATTCGAAGGAGTTGTCTTCCATTGGCGTTGAAGCCACCACTTACACTCGCCTCCCTCCCAGGGAAGACTTCGCTCTTCTTAACTTTGATTCTCCGTCTTTTAATTCTGCTTCTTCTTCGAAGGATTCGTCTGAGGTGAAGCTTTTGGATTCGGATGTTGCCATAATTGAGGAGGAAGATGATTTGGATTCTTTGAACTGTGAAGAGCGGGAGGAAGAAGGGGAGGGAGGATTGGATGGTAATTTGGGGTTTGGGAATGGTTATGGGAAGTTTGAAGTGTTTGAGGGGGAATATGATTCTGAAATGGAGGAGTATGGTGATAGTGATGTGGAAGAGGAAGATGAAGAAGGAGAGAAGGTTTTGGCATTTAGGAAGGGGAAATTTGTTAATACTGATGAAGCTTACGACACTGGCGAAGAGGCAAGTTCTTTCCTCGACGTTGAAGATGGGAAGGAGAAGGGGCTGCCAGCCGTAATGCGGTGCTTTGATCGAGCGAAAATCTACGTTAAAGCTGGAGATGGTGGTAATGGAGTTGTGGCATTTCGGCGAGAGAAGTATGTGCCGATGGGTGGCCCATCGGGAGGAGATGGAGGGAGAGGTGGGAATGTGTATGTTGAAGTTGATGAGTCGATGAATTCGCTATTGCCATTTCGAAATGGCATACATTTTCGTGCTGGAAGGGGTAGTCATGGGCAGGGGAGAATGCAAAACGGGGCAAAGGGTGAGGATGTAGTTGTGAAGGTGGCACCAGGAACAGTGATCAGAGACGCATTTAGCCAGGAGGTACTTTTGGAATTATTGCATCCGGGGCAGCGTGCTCTATTGCTGCGCGGTGGAAGGGGTGGAAGAGGCAATGCATCATTCAAGTCAGGGACAAATAAGGTTCCAAAGATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGCTGGAGCTAAAGCTTGTTGCAGATGTTGGAATCGTGGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCACAGCCAGCCATAGCAAATTACCCTTTTACCACTCTACTCCCCAACTTAGGTGTAGTTTCTTTTGATTATGATTCAACTATGGTGGTAGCAGATCTTCCAGGATTACTTGAAGGGGCACATGAGGGCTTTGGTTTAGGCCATGAATTTCTACGTCACACCGAGAGGTGTTCTGCGCTGGTGCATGTGGTTGATGGATCAGGACCACAACCTGAATATGAATTTGATGCTGTTCGTTTGGAGTTGGAGCTCTTCAGCCCTGAACTAGCTGAAAAGCCCTATCTTGTTGCGTATAATAAAATGGATCTTCCTGAAGCGTATGAAAACTGGCCAGCATTCAAGGAAAAGCTACAAGCTCGCGGGATTGAACCTTTTTGCATGAGTGCAGTAAAACAAGAGGGCACTCATGAAGTCATTAGTGCTGCATATCAGCTGCTAATGGAGAATAAAGAAGCCAGCAAGGAATTTCAAGGTGGGAAAATACCACAGAATCTGGACCATGTGGCAGATAGAATACACAAGCAGCGTAGTGCTTCTATTGATGACTATGAAATTATTCACGATAGCGGGTCCAATGTATGGCATGTAGTAGGATCTGGTCTACAACGTTTTGTTCAGATGACAAATTGGCGTTACATGGAATCTGAAAGAAGGTTCCAACATGTAATGGAGGCTTGTGGTGTCAACAAGTCTCTCAGAAAACTTGGCGTCAAGGAGGGTGACACGGTATTTGTTGCAGAGATGGAGATGATCTGGCATGACTCACCAAATAGTTCTGGTCCATCTAATATGAAGAAAAGATCAGATTCTGTGAAATGGCCAGAGTGGAAGTAA 2325 46.37 MAAISICFAPQALARPRIRNPRSIPSPKKLRGNNKLNRNNVKIKTNSKELSSIGVEATTYTRLPPREDFALLNFDSPSFNSASSSKDSSEVKLLDSDVAIIEEEDDLDSLNCEEREEEGEGGLDALARPRIRNPRSIPSPKKLRGNNKLNRNNVKIKTNSKELSSIGVEATTYTRLPPREDFALLNFDSPSFNSASSSKDSSEVKLLDSDVAIIEEEDDLDSLNCEEREEEGEGGLDGNLGFGNGYGKFEVFEGEYDSEMEEYGDSDVEEEDEEGEKVLAFRKGKFVNTDEAYDTGEEASSFLDVEDGKEKGLPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNGIHFRAGRGSHGQGRMQNGAKGEDVVVKVAPGTVIRDAFSQEVLLELLHPGQRALLLRGGRGGRGNASFKSGTNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIEPFCMSAVKQEGTHEVISAAYQLLMENKEASKEFQGGKIPQNLDHVADRIHKQRSASIDDYEIIHDSGSNVWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGVKEGDTVFVAEMEMIWHDSPNSSGPSNMKKRSDSVKWPEWK 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5835867 5845526 + ClCG05G005930.1 Cla05g00630 272120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00630 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 647 IPR027417 -
Cla05g00630 774 Pfam 50S ribosome-binding GTPase 477 597 IPR006073 GO:0005525
Cla05g00630 774 ProSiteProfiles Obg C-terminal (OCT) domain profile. 672 751 IPR015349 GO:0000166
Cla05g00630 774 Gene3D - 475 654 IPR027417 -
Cla05g00630 774 PRINTS GTP1/OBG GTP-binding protein family signature 478 498 IPR006073 GO:0005525
Cla05g00630 774 PRINTS GTP1/OBG GTP-binding protein family signature 544 562 IPR006073 GO:0005525
Cla05g00630 774 PRINTS GTP1/OBG GTP-binding protein family signature 527 542 IPR006073 GO:0005525
Cla05g00630 774 PRINTS GTP1/OBG GTP-binding protein family signature 499 517 IPR006073 GO:0005525
Cla05g00630 774 Coils Coil 100 120 - -
Cla05g00630 774 Hamap GTPase Obg [obg]. 318 644 IPR014100 GO:0000287|GO:0003924|GO:0005525
Cla05g00630 774 Pfam Domain of unknown function (DUF1967) 681 749 IPR015349 GO:0000166
Cla05g00630 774 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 476 644 IPR031167 GO:0005525
Cla05g00630 774 ProSiteProfiles Obg domain profile. 317 475 IPR006169 -
Cla05g00630 774 TIGRFAM Obg_CgtA: Obg family GTPase CgtA 320 642 IPR014100 GO:0000287|GO:0003924|GO:0005525
Cla05g00630 774 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 683 749 IPR015349 GO:0000166
Cla05g00630 774 SUPERFAMILY Obg GTP-binding protein N-terminal domain 320 474 IPR036726 -
Cla05g00630 774 Gene3D - 681 752 IPR036346 -
Cla05g00630 774 CDD Obg 476 643 IPR031167 GO:0005525
Cla05g00630 774 MobiDBLite consensus disorder prediction 17 40 - -
Cla05g00630 774 ProSitePatterns GTP1/OBG family signature. 529 542 IPR006074 GO:0005525
Cla05g00630 774 Pfam GTP1/OBG 321 474 IPR006169 -
Cla05g00630 774 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 280 724 - -
Cla05g00630 774 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 280 724 IPR045086 GO:0003924|GO:0005525
Cla05g00630 774 MobiDBLite consensus disorder prediction 752 774 - -
Cla05g00630 774 SUPERFAMILY Obg GTP-binding protein C-terminal domain 679 751 IPR036346 -
Cla05g00630 774 Coils Coil 213 233 - -
Cla05g00630 774 Gene3D GTP1/OBG domain 315 474 IPR036726 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00630 - - - csv:101207804 1130.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00630 Cla-Chr5:5835867 Cla05g01905 Cla-Chr5:30896607 1.61E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00630 Cla_Chr05 FPKM 2.988038 3.378711 2.55961 3.053781 3.957074 4.152936 4.2802 3.092211 3.832643 2.242477