Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00632 | ATGAAGCCGTACGGTCACTCTCTTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACACCCCACGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAGGTTACACCAATGCCACCTCCGGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTTCGGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCGAGGCCAAGTGTTGTCCTTAGCCAATTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCCGTGCAGAGGGTCGTACTTGA | 1443 | 49.83 | MKPYGHSLEGSHSDPSPEWTASGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTRAEGRT | 480 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5863747 | 5867936 | - | ClCG05G005940.1 | Cla05g00632 | 272122 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00632 | 480 | SUPERFAMILY | CCCH zinc finger | 140 | 166 | IPR036855 | GO:0046872 | |
Cla05g00632 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 351 | 375 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 304 | 329 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 118 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 165 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 73 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | SUPERFAMILY | CCCH zinc finger | 48 | 75 | IPR036855 | GO:0046872 | |
Cla05g00632 | 480 | SUPERFAMILY | CCCH zinc finger | 94 | 122 | IPR036855 | GO:0046872 | |
Cla05g00632 | 480 | Gene3D | - | 37 | 89 | - | - | |
Cla05g00632 | 480 | Gene3D | - | 347 | 395 | - | - | |
Cla05g00632 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | MobiDBLite | consensus disorder prediction | 278 | 299 | - | - | |
Cla05g00632 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 348 | 376 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | SUPERFAMILY | CCCH zinc finger | 306 | 329 | IPR036855 | GO:0046872 | |
Cla05g00632 | 480 | SUPERFAMILY | CCCH zinc finger | 352 | 379 | IPR036855 | GO:0046872 | |
Cla05g00632 | 480 | SMART | c3hfinal6 | 302 | 329 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | SMART | c3hfinal6 | 348 | 375 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | SMART | c3hfinal6 | 138 | 165 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | MobiDBLite | consensus disorder prediction | 403 | 480 | - | - | |
Cla05g00632 | 480 | MobiDBLite | consensus disorder prediction | 278 | 305 | - | - | |
Cla05g00632 | 480 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 14 | 462 | - | - | |
Cla05g00632 | 480 | MobiDBLite | consensus disorder prediction | 424 | 480 | - | - | |
Cla05g00632 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 330 | IPR000571 | GO:0046872 | |
Cla05g00632 | 480 | PANTHER | PROTEIN PHOSPHATASE RELATED | 14 | 462 | - | - | |
Cla05g00632 | 480 | Gene3D | - | 291 | 338 | - | - | |
Cla05g00632 | 480 | Gene3D | - | 90 | 171 | - | - | |
Cla05g00632 | 480 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cla05g00632 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g01037 | Cla-Chr3:19840153 | Cla05g00632 | Cla-Chr5:5863747 | 9.75E-95 | dispersed | |
Cla05g00632 | Cla-Chr5:5863747 | Cla09g02233 | Cla-Chr9:39959399 | 4.54E-14 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61030 | PF00642 | zf-CCCH | 1.30E-07 | CL0537 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00632 | - | - | csv:101221033 | 852.818 |