Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00632 ATGAAGCCGTACGGTCACTCTCTTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACACCCCACGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAGGTTACACCAATGCCACCTCCGGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTTCGGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCGAGGCCAAGTGTTGTCCTTAGCCAATTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCCGTGCAGAGGGTCGTACTTGA 1443 49.83 MKPYGHSLEGSHSDPSPEWTASGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTRAEGRT 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5863747 5867936 - ClCG05G005940.1 Cla05g00632 272122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00632 480 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Cla05g00632 480 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Cla05g00632 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 375 IPR000571 GO:0046872
Cla05g00632 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Cla05g00632 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 118 IPR000571 GO:0046872
Cla05g00632 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Cla05g00632 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Cla05g00632 480 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872
Cla05g00632 480 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872
Cla05g00632 480 Gene3D - 37 89 - -
Cla05g00632 480 Gene3D - 347 395 - -
Cla05g00632 480 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Cla05g00632 480 MobiDBLite consensus disorder prediction 278 299 - -
Cla05g00632 480 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Cla05g00632 480 SUPERFAMILY CCCH zinc finger 306 329 IPR036855 GO:0046872
Cla05g00632 480 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872
Cla05g00632 480 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Cla05g00632 480 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Cla05g00632 480 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Cla05g00632 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cla05g00632 480 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Cla05g00632 480 MobiDBLite consensus disorder prediction 403 480 - -
Cla05g00632 480 MobiDBLite consensus disorder prediction 278 305 - -
Cla05g00632 480 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 14 462 - -
Cla05g00632 480 MobiDBLite consensus disorder prediction 424 480 - -
Cla05g00632 480 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Cla05g00632 480 PANTHER PROTEIN PHOSPHATASE RELATED 14 462 - -
Cla05g00632 480 Gene3D - 291 338 - -
Cla05g00632 480 Gene3D - 90 171 - -
Cla05g00632 480 MobiDBLite consensus disorder prediction 1 44 - -
Cla05g00632 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01037 Cla-Chr3:19840153 Cla05g00632 Cla-Chr5:5863747 9.75E-95 dispersed
Cla05g00632 Cla-Chr5:5863747 Cla09g02233 Cla-Chr9:39959399 4.54E-14 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61030 PF00642 zf-CCCH 1.30E-07 CL0537 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00632 - - csv:101221033 852.818