Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00634 ATGCTCGCACTGTTTGCTCTATGCTTTGGACCTAGACGCGCTTTGACGGGGACCAGCCATTTGAAAATCGTTTCCGCTTCTCCAGTTGTAACGGTTTTCTTTGAGTTCTCCTATGCAACTGACGGGAAGCAGAGCAGATTGCTGAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTCAATAAGCGGTTTTCTACTGCTAACGAGGCCTCCTCAAGCAAGTACGTGGAAGATGCTAGCAAAAGCAAGCAAAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCGCAATGGAGTAAGGACGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCCGCTGCAGTAAGGAACCGTTCTACAGAAATGGTTGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGCGTACTGAGAGACAGTGAAAGTGAACAAGAAAGCAACGAAGATTCTGGAGCAATAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAGTAACAACTCTAAAGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCACTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACACCACGTGTTCCTGTATCATATTCATATGATAAAGATAGCAGAGAGAAGCTTTTTTCACCCTCCCGACATAATAGCAAGGTGAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCTCAACTTTCACAAACACCAAATCCAAAAATAGAAGGTCATGTACTTTCACCTATCCGAAATGACAGGATGCGAAGTGAATCAGACATGATGAGCATGAAGTTTCGTTGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAACACAGACTATGACCTGGGGAAAAATACTCGTGAGATTCAAAGAAAGGGTAAAAGGTACTATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATTAAGGAAGCTTGCAGTGGGACGGAAGAGGGACAAAAATCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTAGATGTAAAATCTGTGAGATCCTCTTTTAAGGGCCCGAGGAAAAGAAGTAAGAAAGCTCTTTTCGGAGATGAATCTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCAGACACAAATGCTGAGAGTGAGCCTTCTGCTAAGGTTAAAGAAGAAAATCCTGATGTCACGGACAAGTCTAAAATGAAAGGGAGCCATCCAGTTGCTGGAGCTGAAATCTCTGCTCTCAAAACATCTAAGACGGGAAAAGCTTTTGGCAACAATGTCGGTCCTATTCCTGAAGCAGAGGGAATTCAAGGATCCAATAATGGAAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAAATATCATCTAAAGATGAAGATAACAATGATTCTCGTGTCAATGACAATCTGAAAATCAAGGCTGCAGATGAAGCAAAGAGTTCCGTTGGTAAAGTTAAACGTTCCCCTCATAATGCTGGACCTGCAAAGTCTGGCAAAATATCAAAACCTCTAGATCATCACTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAACACAAGTTCTAACAAATAATCCAACCAGCTTACCTACCAAACTTAGGAGCAGGCGGAAGATGAACCTGGGGAAGCCACAGAGAGATTCAAAGCTTGCTGATAATACTTCGATCGATCAACTCAATATAACTGCTCAATCAATAGATGATAGACCACATGATCTCAAGGAGCGGCATTCTAATTGCCTATCTTGGCATAAACTGCGCAGATGGTGTGTTTTTGAGTGGTTCTATAGTGCAATCGATTTTCCATGGTTTGCAAAATGTGAGTTCGTAGAGTACTTAAATCACGTTGGATTAGGTCATATTCCTAGATTGACACGTGTTGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGACCACGGAGATTCTCAGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAGCGAGTCATTGCCATTCATCCAAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGGGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGGCTCTTGATAAAATATTTGGGAATCTCAACGATGCTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATGAAATCAACCAGCAATGATAAACTTGAAAGCACGGAGGGTTCTGTGTATATTTCCCCTTCCACTCATCACATCAACAAATTAATTAAACAAGCAAAGAAACAAATTGAGGAGAGTGTTCATGAGGAGGGAAAGAGCAGTGTGCCCGTTGAAGCTGAGAACCATGAAATTCCAAAATTAGATTCGGGCAGCAGTAATTTAAGAGACAATGATTTTGTAGAGGAGGAGGTTGAAAATTCTCCAGCAAAAGAAGGGTCAAAGAGGCCCAAAAGAGGTGGGGCTGAGAGGAGTTACCTTACCAGAAGTTCCTATTGTCTTCCTTTGTTTAAATATGTCCACAAGGAAGCAAGAATCTGGATGAGGGGCAGGGGCACTGTCTTCAAGTGGATCACTGCCGCTGGAAATGAAAATCCACAGTCTCTTGGCACTTTGTTTGACCTTCTTGATGGACCAGCCAGCCTCACTTATTTTATATTTGCTAACCACCTATTAAGCACAAAAAGGTTTTCCCTTGAGGTTGACCTTGGGTGCTCTAATCTACAAGCTAAATTTGGGCTTAGTGAGACTGTCGGTATTCAACAGGAGGCAAGTTCCCAACCTTCTGCCCTCGCTCAAATTCAAGCAAAAGAAGCTGATGTTCATGCTCTTTCTGAATTGTCACGTGCACTTGACAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGTTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTACTATTACAGTTGAATGAAGTTTCCTCTGCTCTGTATTGCTTGAGGCAGCGCAATACGTATCAAGGGACTTCACCATTGATGTTCCTCAAGCCAGTGCATGATTTGGGTGACCCTTGTTCTCATTCTCAAGAACCCGGTTCCCATGTGGCTGAAATTGTTGGAAGTTCTAGAGCAAAGGCTCAAACAATGATCAATGAAGCAATGCAGGCAATTCTAGCTCTGAGAAAAGGAGAAGGTAATTTGGAGAATATTGAAGAAGCCATTGATTTTGTGAGTAATAGACTCTCCGTGGATGATTTGGCCTTGCCAACTGTGAGAACAACAGCTGCAGATACTAGTAATGCCGCTCCAGTATCTCAGAATCATTTCAATGCGTGTACATCAAACCTGTCGAGTGCTAATTATGTAGTTGGTCCCAAGTCCAATGGCCCATCCGACAAGACTGAAGTGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAACGACAGTTTCCACCATCTGATGTCGCTCAAGTACTGGATTCTGCTGTCACTAGTTTGCAGCCTTGTTGTCCTCAGAACCTTCCACTATATGCGGAGATACAGAAATGCATGGGAATTATAAGGAGCCAGATACTTGCGCTTATACCCACATAG 4047 42.45 MLALFALCFGPRRALTGTSHLKIVSASPVVTVFFEFSYATDGKQSRLLKLMAPSRKSRSVNKRFSTANEASSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNEDSGAIRKPQKRLRGKSRSNNSKGLDAHFGDASQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSREKLFSPSRHNSKVKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIRNDRMRSESDMMSMKFRCSEMDEGGCELSLGSTGADNTDYDLGKNTREIQRKGKRYYGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDLDVKSVRSSFKGPRKRSKKALFGDESSAFDALQTLADLSLMMPDTNAESEPSAKVKEENPDVTDKSKMKGSHPVAGAEISALKTSKTGKAFGNNVGPIPEAEGIQGSNNGNRKRKLKSSPFKISSKDEDNNDSRVNDNLKIKAADEAKSSVGKVKRSPHNAGPAKSGKISKPLDHHSSSSTDHKREDGDYALSTTQVLTNNPTSLPTKLRSRRKMNLGKPQRDSKLADNTSIDQLNITAQSIDDRPHDLKERHSNCLSWHKLRRWCVFEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVALDKIFGNLNDAKINGLLKEAKIEDYMKSTSNDKLESTEGSVYISPSTHHINKLIKQAKKQIEESVHEEGKSSVPVEAENHEIPKLDSGSSNLRDNDFVEEEVENSPAKEGSKRPKRGGAERSYLTRSSYCLPLFKYVHKEARIWMRGRGTVFKWITAAGNENPQSLGTLFDLLDGPASLTYFIFANHLLSTKRFSLEVDLGCSNLQAKFGLSETVGIQQEASSQPSALAQIQAKEADVHALSELSRALDKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVSSALYCLRQRNTYQGTSPLMFLKPVHDLGDPCSHSQEPGSHVAEIVGSSRAKAQTMINEAMQAILALRKGEGNLENIEEAIDFVSNRLSVDDLALPTVRTTAADTSNAAPVSQNHFNACTSNLSSANYVVGPKSNGPSDKTEVEIPSELIAHCVATLLMIQKCTERQFPPSDVAQVLDSAVTSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5909115 5926171 + ClCG05G005970.2 Cla05g00634 272124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00634 1348 MobiDBLite consensus disorder prediction 530 563 - -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 898 920 - -
Cla05g00634 1348 Coils Coil 1200 1220 - -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 930 956 - -
Cla05g00634 1348 CDD SANT 97 131 IPR001005 -
Cla05g00634 1348 SMART sant 93 141 IPR001005 -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 166 184 - -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 288 307 - -
Cla05g00634 1348 ProSiteProfiles SANT domain profile. 92 129 IPR017884 -
Cla05g00634 1348 Pfam Myb-like DNA-binding domain 96 131 IPR001005 -
Cla05g00634 1348 SUPERFAMILY Homeodomain-like 93 139 IPR009057 -
Cla05g00634 1348 Coils Coil 1078 1101 - -
Cla05g00634 1348 PANTHER LIN-9 51 901 IPR010561 GO:0006351|GO:0017053
Cla05g00634 1348 Gene3D - 35 149 - -
Cla05g00634 1348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 131 IPR017930 -
Cla05g00634 1348 Pfam DIRP 680 781 IPR033471 -
Cla05g00634 1348 Coils Coil 733 753 - -
Cla05g00634 1348 SMART DIRP_2 681 782 IPR033471 -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 579 597 - -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 166 211 - -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 460 478 - -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 195 211 - -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 454 597 - -
Cla05g00634 1348 PANTHER LIN-9 1055 1348 IPR010561 GO:0006351|GO:0017053
Cla05g00634 1348 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 51 901 IPR028306 -
Cla05g00634 1348 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1055 1348 IPR028306 -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 898 956 - -
Cla05g00634 1348 MobiDBLite consensus disorder prediction 288 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00634 - - - bhj:120080265 1583.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01533 Cla-Chr2:29856566 Cla05g00634 Cla-Chr5:5909115 2.68E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61032 PF06584 DIRP 2.90E-30 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00634 Cla_Chr05 FPKM 11.663217 11.225207 10.126319 8.445386 5.885978 4.231255 5.498483 8.975525 9.178535 10.524489