Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00646 ATGCTGCTGGTTTTTCCAGCGGCTGCGTGGCGTCTTCAATTAGGTTATTATTATTATTATTATTTTTGTTCTAGTTTGCTTCCTCTCCCCTTTTTCTCTTTTGGGCTCTCTTCTCTGAATTGGTGCGTTTGGTTGGTTGATTATCCGTTTTTTGATCGTTTGGAGTCATATAGTATGCTTCAAGAAGCTTCAACAAAACCTGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGGTAACAAATATGAAGTTCATGATGTTTCTGACAAGTTCGAGATCCAGCCTGGACTTCCAAGGATCAGCAGTTTCTCTTGCTTATCTGGTGCTGCATTGAGTGCTAATGCTACCCTAGCGAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATTCTGCCGACCTGGGACTCTCCTAACTCCTTCCGTAAGGTTCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTTTCAAACTTAAGTTGCAGTCCATCTACCCCAACGTCTGAATATGATTCATACTTGTTGAAATCCATGAGTGCTCCATCCGGAAGTGAAGGTTTCCTTAATGTTAAGGAAGTGCAAGTGGCAGGTGGAGCTGCCGGTGAGGACAGGGTTCAAGCTGTTTGTTCTGAAGAAAATGGATGGCTATTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACATTGTACGAAACCATTGTATTTCATTTTAACCTACTAGATTGGGAAGCTAAGAATGAAACCTCCGACCGTATGGATATGGATAATTCACATCTTCTTGATGATAGTAGCATTACTCAAGGAAGATTTTCTCCTTTCGGAAACAATAGTAAAATTGCTTCAGATATCCCCAATTTATTAGAGAACCATTCATATTCCAAAGCAGGAATGACAAACTGTTCTCTAAGGCATGGGGTGTTCGATAGCCTCCAGCGTGCGCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAAGATCGTCCTGATTTAGTTTCTGTTGGGTCATGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTGTACACGCTAAATTTGGGTGATAGTAGAGCAGTACTAGCTACCCTTGATGAGGGTGCTATGAGAGGGAATGGGGGACTGAAAGCTGTCCAGCTCACTGAGAGTCACACTGTGGATAATGAACTTGAAAGAGCACAGTTACAACATGATCATCCTGATGATCCGGCAATCATAGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCATTTGGAGTTGGCTACTTGAAGACGAAAAAATTTAATGATGCTTTGATGGGTATTCTTCGAGTCCGTAACCTAATAAGCCCTCCCTATATTTCCACTCAACCGGCATTGTCTATCCATAGGATATCAAAATCAGATTGCTTTGTTATAGTTGGAAGTGATGGTTTATTTGACTTTTTTGGCAATGAGGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGCGATCCTGCAAAATTTTTACTGGAGCAGCTCCTATTGAAAGCAGCTGATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCCGGCAGGAGAAGGAAATATCATGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATAGATAGTTTGCTGAAAGATTGA 1758 41.13 MLLVFPAAAWRLQLGYYYYYYFCSSLLPLPFFSFGLSSLNWCVWLVDYPFFDRLESYSMLQEASTKPEGELEVSFGYKCNGNKYEVHDVSDKFEIQPGLPRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSYLLKSMSAPSGSEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFHFNLLDWEAKNETSDRMDMDNSHLLDDSSITQGRFSPFGNNSKIASDIPNLLENHSYSKAGMTNCSLRHGVFDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNGGLKAVQLTESHTVDNELERAQLQHDHPDDPAIIVGGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSIHRISKSDCFVIVGSDGLFDFFGNEEAVNLVHSYILSNPTGDPAKFLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSIDSLLKD 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6027129 6031645 - ClCG05G006060.2 Cla05g00646 272136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00646 585 CDD PP2Cc 210 566 IPR001932 -
Cla05g00646 585 Gene3D - 177 575 IPR036457 -
Cla05g00646 585 Pfam Protein phosphatase 2C 331 517 IPR001932 -
Cla05g00646 585 SUPERFAMILY PP2C-like 211 567 IPR036457 -
Cla05g00646 585 SMART PP2C_4 188 564 IPR001932 -
Cla05g00646 585 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 61 578 - -
Cla05g00646 585 PANTHER PROTEIN PHOSPHATASE 2C 61 578 IPR015655 GO:0004722|GO:0006470
Cla05g00646 585 ProSiteProfiles PPM-type phosphatase domain profile. 197 566 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01969 Cla-Chr2:34757872 Cla05g00646 Cla-Chr5:6027129 9.30E-13 dispersed
Cla05g00646 Cla-Chr5:6027129 Cla10g00177 Cla-Chr10:1883487 2.36E-14 dispersed
Cla05g00646 Cla-Chr5:6027129 Cla04g00806 Cla-Chr4:23116963 2.80E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00646 - - bhj:120073713 972.23