Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00667 ATGGCAACGGCGTACGCAAATCTTCTGAATATCGGAACCAAGATCATCGCCGTCGGCCGGAACTACGCCGCCCATGCCAAAGAACTCGGCAACGCCGTCCCCAAGGAGCCTGTTTTGTTTATGAAACCCACCTCGTCTTACTTGCAAAATGGAGGGACGATCGAGATTCCTCACCCTCTGAAGTCTTTGGATCACGAGGTTGAGCTCGCCGTCGTAATCTCCCAGAGAGCTCGTGATGTTCCTGAAGCCTCCGCCATGGATTATGTTGGGGGTTATGCTCTTGCACTGGACATGACTGCCCGAGAAATCCAAGCTTCTGCAAAGGTGATGGACGATGGTTCTGCAGGCCTTCCATGGACAGTAGCTAAAGGGCAGGACACCTTTACACCCATCAGTTCTGTTCTGTCCAAGGCATCAATCCCTGATCCGGATGATTTAGAATTATGGTTAAAGGTAGATGATGAATTTCGACAGAAGGGCTCAACCAAGGATATGATCTTTAAAATCCCGTACCTTATTAGCCACATAAGTTCACTCATGACCCTTCTTGAAGGAGATGTGATACTAACAGGTATCCACAACCATAGAACTCCCTCAGGCGTTGGCCCAGTGAAGGCAGGTCAGAAGGTGACAGCAGGGATAACAAATATCATAGACGTTCACTTCAATGTCGAAAATCGGAGGAAACCATAA 693 48.63 MATAYANLLNIGTKIIAVGRNYAAHAKELGNAVPKEPVLFMKPTSSYLQNGGTIEIPHPLKSLDHEVELAVVISQRARDVPEASAMDYVGGYALALDMTAREIQASAKVMDDGSAGLPWTVAKGQDTFTPISSVLSKASIPDPDDLELWLKVDDEFRQKGSTKDMIFKIPYLISHISSLMTLLEGDVILTGIHNHRTPSGVGPVKAGQKVTAGITNIIDVHFNVENRRKP 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6197616 6201170 + ClCG05G006230.2 Cla05g00667 272157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00667 230 Pfam Fumarylacetoacetate (FAA) hydrolase family 14 220 IPR011234 GO:0003824
Cla05g00667 230 Gene3D - 2 227 IPR036663 GO:0003824
Cla05g00667 230 PANTHER - 2 229 - -
Cla05g00667 230 SUPERFAMILY FAH 13 224 IPR036663 GO:0003824
Cla05g00667 230 PANTHER ACYLPYRUVASE 2 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00667 K01557 FAHD1; acylpyruvate hydrolase [EC:3.7.1.5] - csv:101207065 415.231
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g161 . . . . . . . . . . . Cma14g01612 . Car14g01431 . . Cpe03g01354 . . . . . . . . . . . . . . Cone14ag0751 Cone15ag0758 . . . . . . . Blo07g00169 Bda11g00520 . . Bpe13g00670 . Bma06g01495 . . Cmo14g01650 . . . . . . . . . . . . . Cla05g00667 Cam05g0731 Cec05g0739 Cco05g0738 Clacu05g0724 Cmu05g0689 Cre05g0763 . Csa03g01484 Chy06g00721 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010280 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00667 Cla_Chr05 FPKM 11.705951 13.137522 0.0 0.0 29.233984 30.990084 25.949318 0.0 0.0 0.0