Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00670 ATGTCTGATGATGGAGGGAAGAACAAGAAAGCTGCTCTCATCGGCGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCTGTGGCAGTCGGTGTCAATCGCAAAGACTCCGACATCGCTGGTGGCCGCGGTGCCACGGCGGAGATCTCCACCTCCACCAAAGCCATTAAGGCTCTCTGTCAGCCCACCGATTACCAAGAAACCTGCGAGACAGCTCTGTCCCAAGCCGGGACCAACACAAGCGACCCACGTGAGCTAATCAAAGCCGGATTCCATGTCGCCGTCGACCAAATCAAATGGGCCATCGGAAATTCCTCCACCTTGAAAGATTCCGCCAGTGATCCCATGGCTAAACAAGCTCTTGACGCTTGTGGCGAGCTAATGGATTACGCAATTGACGATCTCTTAATTTCCTTTGACAGAATCACAGACAATTTCGATATCCAGAAAATTGATGATTACATAGAGGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCTTGGATGGATTCGAAAATGTCACCGGAGATACAGGGGAAAAGATGAAGAATTTGTTGAAAATGTCAAAAGAATTGACAGCTAATGGGCTTGGAATGGTTAGTGAAGTTACTTCCATTATGACCTCTTTTGGGCTTCCATCGGCTGGACGACGGCTGTTGGAGGAATCCGATGAACAAGAGAAAGAGCCGTCGTGGGTTAGTGACAGACGTGGGCTACTTCAAGCCACCGGCGCCACCATCAAGGCGGATGTTGTGGTGGCGAAAGATGGAAGTGGAAAGTACAAAACGGTGAGTGAAGCCTTAAATGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTTATGTTAAGGCCGGAGTTTATCAAGAACAAGTAATGATAGAAAAAAGTATGACTTGGGTAATGATGATCGGAGATGGGCCGACTAAAACCAAGATCACCGCCGGCAAGAACTTCATTGACGGAACACCCACCTTCAAAACCGCTACTGTTGCGGTGATTGGAACCAACTTCATCGCGAAGGACATGGGGTTCGAGAACTCTGCCGGACCAGAGAAGCACCAAGCAGTGGCACTCCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACTCACGCTCACCGTCAATTCTACCGAGACTGCACCATTACCGGCACCATCGATTTCATCTTCGGCAACGGCGCCGTCGTCTTCCAGAACTGCAAGATCCTCGTGAGGAAGCCAATGGAGAATCAACAATGCATCGTCACCGCACAAGGTCGAACTCAACGAAAGGAGCCCACCGCCATAATCTTGCAGAATTGTGTCATCTCCTCTGACCCTGACTTCTTCCCCATCCGCCACATCCACAAAACCTACCTCGGTCGTCCGTGGAAGCAATATTCAAGAACCATCATCATGCAGTCCCAAATTGATGATTTGATCCAACCTGAAGGGTGGCTCCCATGGATGGGCGATTTTGCTCTCAACACTCTGTTTTACACAGAGTACAATAACAGAGGACCTGGCGCCGCAAAGGATAAGCGAGTTAAGTGGAGGGGAATTAAGCAGATCACGCCGGAGCACGCCTTCGATTTCACCGCTGGGAGATTTATTCGCGGTGATCCATGGATCAAGCCCACTGGAGTTCCGTACACTTCCGGCATGATGGCAGTATAA 1707 48.8 MSDDGGKNKKAALIGVSSLFLVAMVVAVAVGVNRKDSDIAGGRGATAEISTSTKAIKALCQPTDYQETCETALSQAGTNTSDPRELIKAGFHVAVDQIKWAIGNSSTLKDSASDPMAKQALDACGELMDYAIDDLLISFDRITDNFDIQKIDDYIEDLKVWLSGALTYQETCLDGFENVTGDTGEKMKNLLKMSKELTANGLGMVSEVTSIMTSFGLPSAGRRLLEESDEQEKEPSWVSDRRGLLQATGATIKADVVVAKDGSGKYKTVSEALNDVPKKSNKTFVIYVKAGVYQEQVMIEKSMTWVMMIGDGPTKTKITAGKNFIDGTPTFKTATVAVIGTNFIAKDMGFENSAGPEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMENQQCIVTAQGRTQRKEPTAIILQNCVISSDPDFFPIRHIHKTYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWMGDFALNTLFYTEYNNRGPGAAKDKRVKWRGIKQITPEHAFDFTAGRFIRGDPWIKPTGVPYTSGMMAV 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6218084 6219879 - ClCG05G006250.1 Cla05g00670 272160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00670 568 PANTHER PECTINESTERASE 12 566 - -
Cla05g00670 568 Pfam Pectinesterase 255 551 IPR000070 GO:0030599|GO:0042545
Cla05g00670 568 CDD PMEI-like_3 58 210 - -
Cla05g00670 568 Gene3D - 249 565 IPR012334 -
Cla05g00670 568 SUPERFAMILY Pectin lyase-like 250 564 IPR011050 -
Cla05g00670 568 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Cla05g00670 568 Pfam Plant invertase/pectin methylesterase inhibitor 55 199 IPR006501 GO:0004857
Cla05g00670 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 208 IPR035513 -
Cla05g00670 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 208 IPR035513 -
Cla05g00670 568 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Cla05g00670 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 203 IPR006501 GO:0004857
Cla05g00670 568 SMART PMEI_2 51 204 IPR006501 GO:0004857
Cla05g00670 568 PANTHER PECTINESTERASE 12 566 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00670 Cla06g00463 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00581 Cla-Chr3:6573097 Cla05g00670 Cla-Chr5:6218084 2.29E-145 dispersed
Cla05g00670 Cla-Chr5:6218084 Cla11g00019 Cla-Chr11:260639 1.72E-172 dispersed
Cla05g00670 Cla-Chr5:6218084 Cla06g00463 Cla-Chr6:5642876 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00670 K01051 - csv:101212686 1004.2