Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00673 ATGGGCATTCATGAGGGCGTGGGAAGACGCATTTTCTTGGTGGACAACCTTACATTTTCAGGCCCATGTTTCAATGGCCTCTCTCCCAAAGTCCTCATTTTAGGCACTTTGATTGCTCCCGCCAACCCCACCACCGACGTTTGGGTCCGCTTCCAATCCCTCCGCCGCCTCATCCTCACCGGCGGCAACGGATCCGCCATTCTCAACGGCCAAGGCGCCCAAACCTGGTCATTCGGTTCCGCTTGCCGTCAACACATGACGTGTGATATATTTGCCACGCTAAGCAATGTGTGGGATGGGATAGTCGGCAACATAAATCTTGTGGATAGCAAAGGCTTTCATGTCTCTGTTTATGGGTGTGACAATGTTCATATTTTTGGATTCAATATTTCAGCTCCTTGGGATAGTCAGAACACTGATGGCATCCACGTTAGTCAATCCACCAATATCAATATCACGGACTCCAATATCGGTGTCGGCGATGATTGCGTTTCCATTGGACCTGGTAGCATCAACGTGTCGGTTTCTAACGTTAGATGTGGTCCGGGACATGGAATCAGTGTGGGGAGCTTAGGGAAGTACAAAATGGAGAATGATGTGATTGGATTAAGGGTGGAGAATTGCACCATTAATGGCACTCAAAATGGAGTGAGGGTGAAGACATGGCCAGGAGATCTTGCAAGCAATGCTACCAATTTGACATTTCAAAACATTGTGATGATCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTCTTGTCATCTGCAACAGTCATCAAGTGTGAAGCTGAGCAATATCGACATAAGCAACATAAGTGGAACTTACAACTCTGAGTTTGCCGTTAATATACAATGCAGCTCAACTACACCGTGTGAGAACATTCAACTTTCTTATATCAATCTCACTTCCACTCAACCACCAGAAAGGGATGAAATTGGCCACTTCAACTGCAAGGCTTCATTACTCAACATGAGCATTAGGACATATGAAAAGCTTAAAAAACATTTTGACAAACAGGAGTCAAGGTCGGTGAAGCTTGAAGGCACCAAAGAGAGCTCAGATTCAGGAGACTCTTTGGAACCCTGCTCTGCTCTGCCGTCCCACTCATTTCTGCCGCACCTTCCGCTGCCGTCGCCGGATCTTGATTCTGCTGTCCTCATGAATTCTAATTTGGGGAAGAATTTCGAGTTTGATTTGGGACTCGGATCCTCTCGCTCCAAATCTCTCAACGATCAGAAAAACAAAACCCCATCATATTCTTCCTACGCTTCCTCTGGTTCGTCGTACTCTTCGACACAGACGAGGCCGGCCTGGCAGCCTAACAAGCCCTCATGGACGCATCAGCCTGCGCCGAATCAGGTGGCGCGCCCTAACTTGTCCAATTCCTCCGCTTCCATGGTTGGTGATATATTTGGGAAGACCTGGGGTTCCACGGCGAATTCCGTTTCCACTGCGGGCATCGGAATTGTTGAAAAGAATCCGAATCTGTTCAGCGATTTGGTAGGTTCTGCCTTGGGATCGGGTAAGAGCAATTCGAATGCTCCATTGAAGAATGCGCCTCCGGCTTCGGTGTCGTCGACTTCCGCATTGAATAGAAATTCGTTTTCGATGGGAAATATGACCGATTCGTTGCCTAAATCCAGTAGTAATCCGGGTAAAAATAGTGGAAATTGGAGTTTTGAGAATCTTAGCAGTTACAACAGTCGGAATAGTAATCAGAGTAATGCCACCAATATCAAGACTCCCAATTTCGGAGGTCCAAGCATGAGTTCAACCATTGGCAGTGGTAAGACGAGCTCTAGCAAGGATCCCTTTGGTTCTTTAGTTGATTTTGGATCTAAATCATCTGGGAATTTGAATTCAACAAGTAAGAGTCAAAATATCAATTCAAGTGAGGACTCTTTTGGGGATTTCCAGAATGCTTCAAATCCAACCACTACAGCATTTCCTTCAAGCAGATCGAATGGGAGTGGTGTTGATTTCAAGGGATCAAGTTTTAATCCTGGCATAAATATGGGTGATTTTGGAATGCCCTCAATGGATTTTGGTTCCAAGGTTCAAGATACTGTTCAAACCACTGCCAGTGATCCACTTGATATGTTGTTTAGCTCATCCAAAGCCCCACCTGGAGGTGCTCCAGTGGCATCTGTCATGGCTGGAGCGTCGCAATCCTTGGATGCTGATGATTGGGGATTGGATTCAGAGTTTGGGGGAGGTGGTCATGATGTGGGTGGTGGTTCAACAACTGAGATCGAAGGACTTCCACCTCCTCCCGCAGGGGTGACAGCTTCTTTGGCAAAGAACAAGGGAGTCGATGTCTACAAGCAGGGACAATACGCCGATGCTATTAAGTGGCTTTCTTGGGCCGTGATTCTTTTTGAGAAAGCCGGTGACAATGTTGCCATAATTGAAGTTTTGTCAACACGAGCTTCATGCTACAAAGAAGTTGGGGAATATAAGAAAGCTGTGGTTGATTGTACGAAGGTATTGGATCAGGATGATGCAAATGTGAATGTTCTCGTCCAACGTGCACTTCTGTATGAAAGTATGGAGAAGTACAGACTTGGAGCCGAAGACCTGAGGGCTGTCCTGAAGATCGATCCGGGTAACAGAGTTGCAAGAAGCACAATTCACCGGTTGACTAAGATTACACTGGTTCCCCGCATGCTATCTAAATTTGGTGGTGCAGTGACTCCACTTCCCGATTACATGGGTGTTGAGTTTGTAATATTGTTTGAGGACTAG 2763 46.15 MGIHEGVGRRIFLVDNLTFSGPCFNGLSPKVLILGTLIAPANPTTDVWVRFQSLRRLILTGGNGSAILNGQGAQTWSFGSACRQHMTCDIFATLSNVWDGIVGNINLVDSKGFHVSVYGCDNVHIFGFNISAPWDSQNTDGIHVSQSTNINITDSNIGVGDDCVSIGPGSINVSVSNVRCGPGHGISVGSLGKYKMENDVIGLRVENCTINGTQNGVRVKTWPGDLASNATNLTFQNIVMINVSNPIIIDQQYCPNHSCHLQQSSSVKLSNIDISNISGTYNSEFAVNIQCSSTTPCENIQLSYINLTSTQPPERDEIGHFNCKASLLNMSIRTYEKLKKHFDKQESRSVKLEGTKESSDSGDSLEPCSALPSHSFLPHLPLPSPDLDSAVLMNSNLGKNFEFDLGLGSSRSKSLNDQKNKTPSYSSYASSGSSYSSTQTRPAWQPNKPSWTHQPAPNQVARPNLSNSSASMVGDIFGKTWGSTANSVSTAGIGIVEKNPNLFSDLVGSALGSGKSNSNAPLKNAPPASVSSTSALNRNSFSMGNMTDSLPKSSSNPGKNSGNWSFENLSSYNSRNSNQSNATNIKTPNFGGPSMSSTIGSGKTSSSKDPFGSLVDFGSKSSGNLNSTSKSQNINSSEDSFGDFQNASNPTTTAFPSSRSNGSGVDFKGSSFNPGINMGDFGMPSMDFGSKVQDTVQTTASDPLDMLFSSSKAPPGGAPVASVMAGASQSLDADDWGLDSEFGGGGHDVGGGSTTEIEGLPPPPAGVTASLAKNKGVDVYKQGQYADAIKWLSWAVILFEKAGDNVAIIEVLSTRASCYKEVGEYKKAVVDCTKVLDQDDANVNVLVQRALLYESMEKYRLGAEDLRAVLKIDPGNRVARSTIHRLTKITLVPRMLSKFGGAVTPLPDYMGVEFVILFED 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6246081 6253472 + ClCG05G006275.1 Cla05g00673 272163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00673 920 MobiDBLite consensus disorder prediction 343 360 - -
Cla05g00673 920 ProSitePatterns Polygalacturonase active site. 177 190 IPR000743 GO:0004650|GO:0005975
Cla05g00673 920 Gene3D Tetratricopeptide repeat domain 767 890 IPR011990 GO:0005515
Cla05g00673 920 SMART pbh1 200 221 IPR006626 -
Cla05g00673 920 SMART pbh1 170 190 IPR006626 -
Cla05g00673 920 SMART pbh1 230 251 IPR006626 -
Cla05g00673 920 SMART pbh1 264 291 IPR006626 -
Cla05g00673 920 SMART pbh1 147 168 IPR006626 -
Cla05g00673 920 SMART pbh1 120 146 IPR006626 -
Cla05g00673 920 MobiDBLite consensus disorder prediction 735 765 - -
Cla05g00673 920 MobiDBLite consensus disorder prediction 408 467 - -
Cla05g00673 920 SUPERFAMILY TPR-like 771 883 IPR011990 GO:0005515
Cla05g00673 920 MobiDBLite consensus disorder prediction 343 367 - -
Cla05g00673 920 Pfam Glycosyl hydrolases family 28 10 318 IPR000743 GO:0004650|GO:0005975
Cla05g00673 920 MobiDBLite consensus disorder prediction 515 668 - -
Cla05g00673 920 Gene3D - 7 368 IPR012334 -
Cla05g00673 920 SUPERFAMILY Pectin lyase-like 12 311 IPR011050 -
Cla05g00673 920 PANTHER OS03G0340700 PROTEIN 399 889 - -
Cla05g00673 920 SMART tpr_5 843 876 IPR019734 GO:0005515
Cla05g00673 920 SMART tpr_5 809 842 IPR019734 GO:0005515
Cla05g00673 920 SMART tpr_5 769 802 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00673 - - - bhj:120088121 851.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00673 Cla-Chr5:6246081 Cla08g00753 Cla-Chr8:19869108 1.35E-78 dispersed
Cla05g00673 Cla-Chr5:6246081 Cla02g00256 Cla-Chr2:2587659 9.46E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g149 . . . . . Bpe14g01113 . . . . Cma06g01540 Cma14g01608 . Car14g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01644 . . . . . . . . . . . . . Cla05g00673 . . Cco05g0746 . . . . . Chy06g00728 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008564 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00673 Cla_Chr05 FPKM 12.902757 14.048489 21.783258 22.787617 10.952226 11.173889 12.466165 17.188 15.274615 16.118675