Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00679 ATGTCTACAGCCAGTTCGAGTTCTGTAAGGAAAGCTGGTGAAGCTGTTCCCGACCAGTTTCCGGCTGGCCTTCGTGTTCTGGTTGTGGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGAAGTAACAAATTGTAGTCGAGCCGAGGATGCACTGTCTCTTCTCAGACAGTACAAAAACGGGTTCGATATCGTTTTGAGTGACGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCACGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAATCTGGATGTGTTGACGATGCAGATCGGCAGCAAAAAACTAATGAAGATGCAGATTATTCATCATCTGCTAATGAAGGGAGTTGGAGGAATTCAAAGAGAAGGAAGGATGACGTTGAAGACCCTGAGGAGAGGGACGATTCGTCGACCCTAAAGAAACCAAGGGTCGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTACCTGAGAAGACTAAGTGGAATCACGCAACACCAGAGTAATTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGTCCCGTCGATGAATGGCCTTGATCTTCAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCCGGCATGCCTATGCCTCTTGTCGATCAGAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTCGGTGATGGGCAACAACCACACTTGAATGGTAATAAGCCAATGAACCTACTTCATGGAATTCCAACAACTATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAAGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTCGAGCGCAGATCCTTAACGAAAGCACCTCAACTAGCGTAACAAGGCTTCCACCAACAATGCAGCAGTCAATTTTGCCGAATGGAACTACTGGTGCGGTTTTGGCTAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCTTGAATCAAACTGCAGAATTGCCTGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGCATTGTACCAAAGGGAAGATTTCCAGACGAGGTTAACTCCGACATTAAAGGATCTGAAGGTTTTGTATCAAGCTATGATATGTTTAGGGATCTCCATCCTCAGAAACCCCATGATTGGGACTTGCAACACGTAGGGCTGACCTTCGATACATCTCAAGGTAGTCTCGACATTCCACCTTCTGCTTTTGCTCACCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAATAGGAATGCATCTACCGCAGGCAAGGCCATGTTCTTATTGGAAGAAGGAAGTGACAATGGTAATGCACAAAGTGTGGGCCATCAACTCAACCCTCTTTTCGTCGATGGTTCGGTGAGAGTTAAAGCTGAAAGAGCTCCTGATACTAGCAATCAAACAGACCTTTTCTCTGACCATTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAAGGAAGCATTGCAACAGCTGAAAGTGAATTGGAATGGGTGTTTCATCATAATACTCCTGTTTAG 1986 44.71 MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTNCSRAEDALSLLRQYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDADRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDPEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFVPSMNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGNKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGSQSSSQLMQTPQPQARAQILNESTSTSVTRLPPTMQQSILPNGTTGAVLARNEFANNSRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDEVNSDIKGSEGFVSSYDMFRDLHPQKPHDWDLQHVGLTFDTSQGSLDIPPSAFAHQGYASSQQNGQNRNASTAGKAMFLLEEGSDNGNAQSVGHQLNPLFVDGSVRVKAERAPDTSNQTDLFSDHFGQEDLMSALLKQQQGSIATAESELEWVFHHNTPV 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6321293 6325341 + ClCG05G006350.1 Cla05g00679 272169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00679 661 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cla05g00679 661 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 634 IPR045279 GO:0009736
Cla05g00679 661 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cla05g00679 661 PIRSF RR_ARR_type-B 5 651 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cla05g00679 661 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Cla05g00679 661 SMART REC_2 24 136 IPR001789 GO:0000160
Cla05g00679 661 Gene3D - 201 263 - -
Cla05g00679 661 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Cla05g00679 661 MobiDBLite consensus disorder prediction 180 202 - -
Cla05g00679 661 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Cla05g00679 661 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 634 - -
Cla05g00679 661 MobiDBLite consensus disorder prediction 154 202 - -
Cla05g00679 661 CDD REC_typeB_ARR-like 26 140 - -
Cla05g00679 661 SUPERFAMILY CheY-like 23 147 IPR011006 -
Cla05g00679 661 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Cla05g00679 661 Gene3D - 24 158 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00679 Cla06g00448 CCT
Cla05g00679 Cla06g00448 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00590 Cla-Chr4:19825042 Cla05g00679 Cla-Chr5:6321293 3.44E-24 dispersed
Cla05g00679 Cla-Chr5:6321293 Cla05g01695 Cla-Chr5:28690664 1.45E-111 dispersed
Cla09g00502 Cla-Chr9:4747717 Cla05g00679 Cla-Chr5:6321293 1.90E-12 dispersed
Cla05g00679 Cla-Chr5:6321293 Cla06g00448 Cla-Chr6:5465586 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61035 PF00072 Response_reg 1.50E-22 CL0304 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00679 - K14491 csv:101209013 1245.72