Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00680 ATGGCCTTCGCCGATCTCATCTTCTTCCTCATCTTTACGGCCATACCCTTTTCGATTTCTCAGCCAACTGACCAAGCTCCACCTCCTGCCGCCGGTTCCTGCAATGGCATCTTCTTGTCCTATACTTTCGATCAAGGAACCAAGCTTCCCCCAAATCTCACTGTTCTCGCTCGCCAGCCCTACCGATTCGAGTCCACTCTCTCCATACTCAACAACGGCCTTACGGAGCTCAAGTCTTGGATGGTTTTTGTGGGGTTTCAACACGATGAGTTCTTGGTCTCCGCCTCCGGCGCTGTCCTCGCCGATGGTAATTCCTTCCCTGGTAACGTTGGTAATGGGACTGTCTTCGCTGGTTTTCCGATGACTGACTTGAAGACCGCCATTGAAACTGCTGGGGACATCACTCAGATGCAAGTCCAAGTCAAGTTACTTGGGACCCAATTTGGGGTTGCCCCTCCGAAAAGTCCGATGCCTTCGAATATATCTCTTGCAAATGATGGATATTTTTGTCCCAAGCCAACTCTACAAGGAAAGAGTGAGATGCACGTCTGTTGCACACCCGATCTACGCGTGAAAACAAATATCACAACCAGTGAAGCGTTCTTGCCTCGTCAAAATGGTGATCTAACGATTATGTATGATGTGACAAGGACATATGATTCAAGTTACTGGGCACAAGTTACAATCTCTAACCATAATCCTCTTGGTCGTCTTGACTATTGGAAATTGAGCTGGGATTGGATGAGGGATGAGTTTATCTATTCAATGAAAGGGGCTTATCCTTCGGTTGTTGATTCTACTGACTGCATTTTTGGTAGACAAGGCACTTATTATCGGGAGTTAGACTTTTCCAATGTATTAAGTTGTGAAAGAAGGCCAACTATTGTTGATTTACCTCCAACCAAGGCCAACGACACCACTCTCGGGTTGATCCCTTTCTGCTGTCGAAATGGGACAATCTTGCCATCTCATATGGACCCGACTAAGTCGATTTCTGCATTTCAGATGCAAGTGTTTAAAATGCCACCGGATCTTAATAGATCCCAGATTACGCCACCTCAGAATTGGCAGATCAGTGGCATTCTCAACCCCACATATAAATGTGGCCAGCCAGTGAGGGTAAGTCCTAGCGAATTCCCCGACTCAAGTGGTTTACCACTGAATTCGACTGCAGTAGCGAGCTGGCAGGTTGTTTGCAATATAACACATGCTAAGGATGACACCCCGAAGTGCTGTGTTTCCTTTTCATCTTACTACAATGATTCTGTCATCCCGTGCAGAACATGTGCTTGTGGATGCTCGCAAAACTCGGCCCGTACCTGTAATGCAACCTCCCCTGCAATGCTCCTCCCACCTGAAGCCCTTCTCGTTCCTTTTGAGAATAGGACCGCCATGGCTGTTGCTTGGGCTGATATTAAACATTTCCCTACTCCTAACCCGATGCCTTGCGCAGATAACTGCGGTGTCAGTATCAATTGGCATTTATATACTGATTATAGAGACGGATGGAGTGCTAGGATCACTCTCTTCAACTGGGACGAAGTGAATTTTGCAGATTGGTTTGCTGCAGTTCAGATGAACAAAGCAGCACCTGGTTTCCAGGCAATGTACTCGTTCAATGCAACCACCTTGGAATTGAATGGTTCCAACAATACTATCTTTATGCAGGGTAATCCTGGACTAAACTATCTCGTGGGAGAAACAGACGGGGCGAACCCATCAAAAGATCCACGGGTACCTGGAAAACAGCAATCTGTGATCTCATTTACAAAGAAGAACATACAAGGTCTTAACATGGCTGCTGGAGATGGGTTCCCCACAAAAGTATTCTTCAATGGGGAGGAATGCTTACTTCCAAAAATGTTCCCAGCCAACTACAGCCAAAGGAACTTAGCTTCATTCGTTTTGAGCATCCTAATGCTACTACTCGTGTTCGTGTTCATTCAGCAATAG 1953 46.34 MAFADLIFFLIFTAIPFSISQPTDQAPPPAAGSCNGIFLSYTFDQGTKLPPNLTVLARQPYRFESTLSILNNGLTELKSWMVFVGFQHDEFLVSASGAVLADGNSFPGNVGNGTVFAGFPMTDLKTAIETAGDITQMQVQVKLLGTQFGVAPPKSPMPSNISLANDGYFCPKPTLQGKSEMHVCCTPDLRVKTNITTSEAFLPRQNGDLTIMYDVTRTYDSSYWAQVTISNHNPLGRLDYWKLSWDWMRDEFIYSMKGAYPSVVDSTDCIFGRQGTYYRELDFSNVLSCERRPTIVDLPPTKANDTTLGLIPFCCRNGTILPSHMDPTKSISAFQMQVFKMPPDLNRSQITPPQNWQISGILNPTYKCGQPVRVSPSEFPDSSGLPLNSTAVASWQVVCNITHAKDDTPKCCVSFSSYYNDSVIPCRTCACGCSQNSARTCNATSPAMLLPPEALLVPFENRTAMAVAWADIKHFPTPNPMPCADNCGVSINWHLYTDYRDGWSARITLFNWDEVNFADWFAAVQMNKAAPGFQAMYSFNATTLELNGSNNTIFMQGNPGLNYLVGETDGANPSKDPRVPGKQQSVISFTKKNIQGLNMAAGDGFPTKVFFNGEECLLPKMFPANYSQRNLASFVLSILMLLLVFVFIQQ 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6326478 6329443 - ClCG05G006360.1 Cla05g00680 272170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00680 650 Pfam COBRA-like protein 223 402 IPR006918 GO:0010215|GO:0031225
Cla05g00680 650 PANTHER COBRA-LIKE PROTEIN 7 7 647 - -
Cla05g00680 650 PANTHER COBRA-LIKE PROTEIN 7 7 647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00680 - - - csv:101209258 1267.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00680 Cla-Chr5:6326478 Cla05g01523 Cla-Chr5:25005293 0 dispersed
Cla05g00680 Cla-Chr5:6326478 Cla10g00527 Cla-Chr10:6977870 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g112 Blo01g00059 Blo12g00091 Bda03g01159 Bda08g00305 Bpe04g01104 . Bma04g01143 Bma05g01021 . . Cma06g01550 Cma14g01601 Car06g01315 Car14g01418 Sed02g1150 Cpe08g00164 Cpe03g01343 Bhi01g01058 Tan10g1052 Cmetu06g2109 . . . Lcy11g1368 . . . . . . . . Cone15ag0747 Cone7ag0119 Cone4ag0122 . . . Cme06g00765 . . . . Bpe05g00746 . . . . . Cmo14g01635 . . . . . . . . . . . . . Cla05g00680 Cam05g0747 Cec05g0753 Cco05g0753 Clacu05g0739 Cmu05g0704 Cre05g0778 . Csa03g01498 Chy06g00736 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01531 CCT,ECH 48 473 COBRA Gene Family AT5G60920 75.4 3.6e-205 711.1
Cla07g01518 . 119 525 COBRA Gene Family AT5G60920 75.4 3.5e-200 694.5
Cla06g01530 . 55 452 COBRA Gene Family AT5G60920 69.1 6.9e-180 627.1
Cla07g01519 . 31 426 COBRA Gene Family AT5G60920 68.2 1.5e-179 625.9
Cla04g01143 CCT,ECH 37 436 COBRA Gene Family AT5G60920 60.1 6.1e-152 534.3
Cla05g01018 . 31 425 COBRA Gene Family AT5G60920 54.5 1.3e-130 463.4
Cla07g01518 . 94 523 COBRA Gene Family AT3G02210 74.2 1.9e-202 702.2
Cla06g01531 CCT,ECH 22 477 COBRA Gene Family AT3G02210 70.0 1.0e-200 696.4
Cla07g01519 . 5 429 COBRA Gene Family AT3G02210 66.8 3.4e-180 628.2
Cla06g01530 . 27 452 COBRA Gene Family AT3G02210 66.1 6.4e-179 624.0
Cla04g01143 CCT,ECH 11 430 COBRA Gene Family AT3G02210 58.7 3.2e-154 542.0
Cla05g01018 . 1 420 COBRA Gene Family AT3G02210 55.0 1.3e-139 493.4
Cla06g01531 CCT,ECH 21 472 COBRA Gene Family AT3G29810 70.7 7.9e-198 686.8
Cla07g01518 . 104 523 COBRA Gene Family AT3G29810 72.4 1.4e-194 676.0
Cla07g01519 . 14 428 COBRA Gene Family AT3G29810 66.0 6.5e-176 614.0
Cla06g01530 . 38 436 COBRA Gene Family AT3G29810 66.7 1.6e-174 609.4
Cla04g01143 CCT,ECH 25 435 COBRA Gene Family AT3G29810 58.6 1.5e-151 533.1
Cla05g01018 . 13 430 COBRA Gene Family AT3G29810 55.1 7.5e-140 494.2
Cla06g01530 . 32 363 COBRA Gene Family AT5G15630 83.1 4.1e-178 620.9
Cla07g01519 . 9 339 COBRA Gene Family AT5G15630 82.5 1.7e-176 615.5
Cla06g01531 CCT,ECH 31 387 COBRA Gene Family AT5G15630 67.9 3.2e-146 515.0
Cla07g01518 . 104 433 COBRA Gene Family AT5G15630 68.5 7.8e-145 510.4
Cla04g01143 CCT,ECH 15 341 COBRA Gene Family AT5G15630 62.1 1.4e-133 473.0
Cla05g01018 . 19 341 COBRA Gene Family AT5G15630 50.3 8.0e-97 350.9
Cla07g01518 . 102 295 COBRA Gene Family AT5G60950 60.0 5.3e-64 241.1
Cla06g01531 CCT,ECH 19 250 COBRA Gene Family AT5G60950 51.1 6.1e-60 227.6
Cla07g01519 . 27 207 COBRA Gene Family AT5G60950 57.5 2.0e-58 222.6
Cla06g01530 . 51 231 COBRA Gene Family AT5G60950 57.5 4.4e-58 221.5
Cla04g01143 CCT,ECH 33 213 COBRA Gene Family AT5G60950 51.9 1.1e-48 190.3
Cla05g01018 . 12 413 COBRA Gene Family AT1G09790 60.2 7.3e-151 530.8
Cla07g01518 . 100 503 COBRA Gene Family AT1G09790 54.0 2.8e-134 475.7
Cla06g01530 . 41 434 COBRA Gene Family AT1G09790 53.4 3.1e-133 472.2
Cla07g01519 . 3 410 COBRA Gene Family AT1G09790 51.1 1.0e-128 457.2
Cla06g01531 CCT,ECH 32 458 COBRA Gene Family AT1G09790 50.1 8.7e-128 454.1
Cla05g00680 . 34 643 COBRA Gene Family AT4G16120 66.7 1.2e-255 879.4
Cla10g00527 CCT 59 667 COBRA Gene Family AT4G16120 54.2 7.7e-205 710.7
Cla05g01523 CCT 46 646 COBRA Gene Family AT4G16120 53.5 4.6e-202 701.4
Cla05g00680 . 11 649 COBRA Gene Family AT3G16860 63.1 3.1e-243 838.2
Cla10g00527 CCT 59 656 COBRA Gene Family AT3G16860 52.8 9.3e-195 677.2
Cla05g01523 CCT 40 647 COBRA Gene Family AT3G16860 51.4 5.6e-192 667.9
Cla05g00680 . 7 639 COBRA Gene Family AT5G49270 61.0 7.4e-240 827.0
Cla10g00527 CCT 59 654 COBRA Gene Family AT5G49270 52.0 3.5e-197 685.3
Cla05g01523 CCT 35 642 COBRA Gene Family AT5G49270 51.4 6.7e-193 671.0
Cla10g00527 CCT 55 674 COBRA Gene Family AT3G20580 62.6 1.1e-248 856.3
Cla05g01523 CCT 12 634 COBRA Gene Family AT3G20580 61.9 3.7e-247 851.3
Cla05g00680 . 27 627 COBRA Gene Family AT3G20580 54.9 3.2e-206 715.3
Cla10g00527 CCT 59 675 COBRA Gene Family AT4G27110 63.1 2.1e-242 835.5
Cla05g01523 CCT 40 660 COBRA Gene Family AT4G27110 59.1 8.5e-228 786.9
Cla05g00680 . 24 645 COBRA Gene Family AT4G27110 51.9 2.4e-198 689.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005453 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00680 Cla_Chr05 FPKM 0.729022 1.228322 0.295662 0.0 2.079762 2.25964 2.474472 0.0 0.0 0.0