Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00688 ATGGGAAGAAGAAGAAAAAATATGGCAGTGACACATGAAGATCTTCTACCAAGTCGAAAGAGCTCTGAATTAGGCAGCAAAATGGGGACTTTCCTTATGATTTTGACCATCCTTTGTGGCCTATGTTGCTTCATTCTTTGCCTCATTGCTGAGTCTACTCGTTCCCAGGTGATATGGAGGGGTATGGATGAAAATAATAAGAAGGGAGAAAAGAGATGCTCGTACAGCGGCAGCGGGAAGACACCGCTGCTGTGCACGGCGAGCTCGTTTCTCGGGATGGCAGTGATAATGGTGGTGCAACATTTGTATGTGTTGATTGCAGTGAGTAAGTCACCGCCTCCTGCTCTCATTTCTTGGGATCCTTCTTTAGCAACTTCCAAATCTCTAACCTTTCAAGCTGCTTTCTTCTTCGTTTCAACATGGATAAGTTTTGCAGTGGGAGAAATTTTGTTGTTAATAGGATTGAGTGTGGAGTCGGGGCATTTGAACAACTGGTCAACTCCAAGAGAAAGCTGCTTGGTGATCAAAGAAGGTTTGTTTTCAGCTGCCGGAGTTTTTCAATTGGCCACGGTCTTCCTCGCCGCCGGCCTCTACATGACGGCGGTGCGAGCACAGAGAATGTTTGAAGAGCAAGAAAATGTGAGAAGAGAGGTGCTGGAAAGTTACCATATCCACAGTTCCCCGCCACGGTCGTCGCCGCCGCTGCAGCCAATGCCGCCGATTGCAAGAGAAGACCCTGTAATCAGACATAGCCACCACCATCAAGAGACTCCCCTTTTTTCCCTGCTTCAATCTACTGCCCCTTTTTGCAAGCTCTCTGCTTGA 825 47.64 MGRRRKNMAVTHEDLLPSRKSSELGSKMGTFLMILTILCGLCCFILCLIAESTRSQVIWRGMDENNKKGEKRCSYSGSGKTPLLCTASSFLGMAVIMVVQHLYVLIAVSKSPPPALISWDPSLATSKSLTFQAAFFFVSTWISFAVGEILLLIGLSVESGHLNNWSTPRESCLVIKEGLFSAAGVFQLATVFLAAGLYMTAVRAQRMFEEQENVRREVLESYHIHSSPPRSSPPLQPMPPIAREDPVIRHSHHHQETPLFSLLQSTAPFCKLSA 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6383462 6386798 - ClCG05G006400.1 Cla05g00688 272178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00688 274 PANTHER OS07G0462200 PROTEIN-RELATED 15 240 - -
Cla05g00688 274 PANTHER OS05G0433100 PROTEIN 15 240 - -
Cla05g00688 274 Pfam Protein of unknown function (DUF1218) 90 191 IPR009606 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00688 - - - csv:101213882 462.996
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g108 . . . . . Bpe14g01106 . . . . Cma06g01552 . Car06g01317 Car14g01414 Sed02g1145 Cpe08g00162 Cpe03g01340 Bhi01g01066 Tan10g1057 Cmetu06g1456 . Hepe05g1398 . Lcy11g1360 . . . . . . . . . Cone7ag0114 Cone4ag0118 . . . Cme06g00769 Blo02g00485 . . Bda13g00209 . . Bma02g00921 . . Cmo06g01551 Cmo14g01632 . . . . . . . . . . . . . Cla05g00688 Cam05g0752 Cec05g0760 . Clacu05g0744 Cmu05g0709 . . Csa03g01502 Chy06g00739 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012861 1 1 1 1 1 0 2 0 1 0 1 0 1 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00688 Cla_Chr05 FPKM 3.539427 3.067855 0.0 0.0 0.0 0.0 0.0 0.255944 0.108453 0.228527