Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00696 ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGAAGTTGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTCCACTTCCTTTTTCTTTTTTTCTTTTGGAAAGCCTTTCTTTGTTTGCAAGGCTTGTGCTTCTTTTTCCCATATTGTCTCGTTTATCATCGTTAG 360 43.06 MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVHFLFLFFFWKAFLCLQGLCFFFPYCLVYHR 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6477348 6479905 + ClCG05G006460.2 Cla05g00696 272186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00696 119 Gene3D - 1 46 - -
Cla05g00696 119 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Cla05g00696 119 Pfam RNA polymerases M/15 Kd subunit 4 36 IPR001529 GO:0006351
Cla05g00696 119 SUPERFAMILY Zinc beta-ribbon 52 90 - -
Cla05g00696 119 PANTHER DNA-DIRECTED RNA POLYMERASE 1 89 IPR012164 GO:0006351
Cla05g00696 119 SUPERFAMILY Zinc beta-ribbon 1 48 - -
Cla05g00696 119 Gene3D - 47 91 - -
Cla05g00696 119 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Cla05g00696 119 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00696 K03017 RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9 - csv:101211228 184.882
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g85 . . . . . . . . . . Cma06g01557 Cma14g01595 Car06g01322 . Sed02g1140 Cpe08g00156 . Bhi01g01081 Tan10g1067 Cmetu06g1826 . Hepe05g1391 . Lcy11g1347 . . . . . . . Cone14ag0724 Cone15ag0734 . . Lsi05g01585 . . Cme06g00780 . Blo07g00154 Bda11g00508 . . Bpe13g00690 . Bma06g01474 . . . . . . . . . . . . . . . . Cla05g00696 Cam05g0763 Cec05g0771 Cco05g0766 Clacu05g0754 Cmu05g0719 Cre05g0794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011015 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 0 1 2 1 1 0 1 2 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00696 Cla_Chr05 FPKM 3.266398 3.626875 5.216918 4.898514 10.647344 13.036432 10.748749 9.908409 9.434571 9.022244