Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00697 ATGACTAATATGGCTCTTCGAAAGTTTGTTTGTGGAGCTACACCTTCTATTAACTTGAAACATTCAAGTTTCCCCATTAAGTTGCACGAACAAACTCAATTTGAAGAACCTGAGACTAACCAGACGTTGGAGCCTGATGTAGATATTGACCCTAGAGAAGTATATTTTCTTATTATGCACTTTCTTTCATCTGGGCCATGTCGTAGAACTTGTGGGCTACTATGGGAGGAGCTTTTCGAACATCAGCTTTTACCCCGACGATATCATGCATGGTATTCAAGAAATGGGATGCATAGTGGCCATGAAAATGATGATGGCTTGTCATTTCCATTAAGTTACCAACACTTAGTGGAGAGGTATCCACATGTCGATAAGAATCACCTGATAAAACTTTTGAAGCAATTGATACATAACAAGGCCCCTCCATCTAGAGGTATGAGTGGTGGAATTGCTCCAAATGCAGCTGACGTGCCTACATTATTGGGAACAGGCACATTTTCACTTTTGAGCTATGATAAACATGAAGGAGTTGGCAAACCAAGTGGTCCCCCAGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCCCCATCTGTGCGTGCAGCATGTTATGCAATTGCTAAGCCATCAACAATGGTGCAGAAAATGCAAAACATAAAGAGGCTACGAGGGCACAGGAATGCTGTCTATTGTGCAATTTTTGATCGCATGGGAAGGTATGTTATAACTGGGTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGTTGCCGAGGACATGAGGGTGATATCACTGACCTTGCTGTTAGTTCTAACAATGCTGTGGTGGCATCATCTTCAAATGATTTTGTTATCCGTGTTTGGCGTTTGCCTGATGGGCTACCAATTTCAGTCTTACGAGGACATACTGGTGCTGTTACTGCAATTGCCTTTAGTCCCAGAGCTGCATATCAGCTTCTTTCATCGTCAGATGATGGAACATGCAGGATATGGGATGCTCGGAGCTCTTCTCAGAATGCTCCTCGGATTTATGTTCCAAGGCCTTTGGACTCTGTGACTGCAAGAAATGGTGGCTCTTCCGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGCTGTGCATTTAATGCTTGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTCTAGCAAGGGTTTGGAGTGCCTGCAAGGGAAACAATGATAACCCAGACCAACCAAATCATGAGATTGATGTGTTAGCTGGCCACGAGAATGATGTCAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCAAGATTTACAACTACTGACATTGCGAAGGAAGACAATGTGCACAAGTTCAAAAACTCCTGGTTCACTTATGACAATATAGTTACTTGTTCTCGTGATGGAAGTGCAATTATTTGGGTTCCAAGATCACGGAGATCACATGGGAAGGTTGGTCGCTGGACCCGTGCATACCATTTAAAAGTGCCTCCTCCACCCATGCCGCCACAACCTGCCCGAGGCGGCCCTCGTCAGAGGATTCTTCCTACCCCTCGTGGTGTAAATATGATAATTTGGAGCCTAGATAATCGTTTTGTCTTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTTCACTCTTTGACAGGTCATACTGAATCGACATATGTGCTCGATGTTCATCCTTTCAATCCGAGGATTGCTATGAGTGCTGGATATGATGGAAAGACAATAGTTTGGGATATTTGGGAAGGCACACCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTTGATGGGAAGTTTTCATCAGATGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACGGGGCAGGGAGAATCCCAACAGGATGCCAAGTACGATCAGTTCTTTCTTGGTGACTATCGCCCACTTATTCAGGATCCTTCCGGCAATGTAGTTGACCAGGAAACCCAACTCAGTACTTACAGAAGGAATTTGCAAGATCTTCTTTCTGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGACGTTTAGGTGCTATGGGTCTTGAGTGGCGTCCCTCTTCTCTAAAACTTTCTGTTGGGCCCGACTTCAATCTCGACCCAGATTACCAATTGCTGCCTTTGGCAGACTTGGACATGTTGATTGAACCATTGCCTGACATTGTGGATGCAATGGATTGGGGACCAGAAAATGAAGTACAAAGTGAGGATACTGATTCAGAATACAACGTCACTGAAGATTACTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCAAACTGCTCAACGGATCCAGAATGCAGCTCCGAAGACACGGGGATTGACGATGCTCCTGCTGATGGTCTTCGAAGATCAAAAAGGAAAAAACAGAAAGCTGACATGGAAGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGAAATATGGATGAGTATGAAGGCGATACTGTCAGGAGTTCCAGAAGTCGGAAGTTAAAATCTGGCCATAAGCCTTCCAAAAAGAAATCAGCATCCAAGTCATTAAGACCTCAAAGAGCGGCTGCACGTAATGCCCGCAATTGGATATCATCATTTAAGGGAAAATCTACCGATGGAGAAGAAGAATATGAGTCAGGAGGTGATTGCTCAGAAAGTGAATCTTCGTTAGAAGATTCAGACATTGAGAGTGATGAATATGAAAGGTCATTGCAAAACAGAAATAAGCATTCAAAAGGGAAAGAAGTATTCCTAGACGGAGCTGAGGAGATTACAAAATCTCTTGATGTTCCTGAATCTCGTGTAGATCCTGGAAACAGAAAGAAGTTGATCCTTAAATTCTCCCTTAAGAATCCAAATAAGGTTGATCCTCCTTCAAACACAGCACTTACTTGTTCCAACATGGCTGATGTGGCTAGCTCATCATCAAGATCACCAAAGGAAGTTATTGAAACCAGTCAGAATCTTATGAGATCTGAGAGGCACTTTGTAAATATTGATGGACATTCTGATTTGACTGAGGTCTACACTAATGGGAACATAAGATGGGGAGGATCCAGGGTTCGTTCTTCCAAGCGCATAAGATTTGGGGACACTGTACCTTCTGATGCATATGCAGTATCTACTTCACTTCCCAATGGCGATCATAATGAAAATGAGAATGCAGTTAATGAATATTTAGAACGAGAAAATCATTTTGGTGCACCATCCCCCCTTGCAGGGGTGCAGAATTATTCTGCAGATGAAATGGACGCAGTATCTCCCACAAATTTGAAGTATGAGGATGATAATGCTTCTGGGCACTCTCAGGAGATGGTTAGTGGTGGAGAGCTTAAATGTGTTAGCAACAGCAAGTCCTGTGATCATGATGATTCAAGTAATTTGAATTTCGTGTTTTCTTCAGTTGCAACCACCACATCAATACAAAATGGGGCTCCTGCTCCTGAGCAAACTGAAAACATTGCACCAATGTGTACAAAGATAAGGTTCAAGAGTATTTCCTTGGATCCTGAACATTCATTGAAGCATAAAATAGAGTCCTTAGATGAAAGCTCGAAGAATGATGAATACAATACAGTATCTGGAAGCCCTCAGCATATAGATGGGCTACAGGATAATGTCATGAATGAAACTTATTCTGATCATAGAAATGATTGCCCACAAGATATGGACATTGCAATGGATGAAAAGCCAGTTTCAACTTTATGCAACTCATCAGAGTTGCAAGCAGTTGAGACAAACAAAATGTACACTGCAGTTTATAAAAGATCTAAGTCAAACAAAGGAAAGAGCAATATAGATAACAACGGTTGTGGCTCTGGAGAACATGCCTCAGGCAACAGTAGTCTACCTGCTGAAGCAGACAATCACAAAATTATGCTTCGGAAGACACGATCTTTAAGGTTTAAGGATTCCTCATATGATCTAAATAATGTGGGTGATGATCCAAAATCAGATGAAGATCAAGAACTTGAACAGAGATCAAGACGTTCTGGAAATTCTTCTGCGAACAGATCCCATATACCAATTGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCCAGGTCCACTCGAAACAGAAGGGGTACTCTTGCTCAAGACATAAGTCCGGTAGACAGAAGAAAGTCGGTTCAATATCCCAGAAAAGGATCATGGTTAATGATGCCTGCACATGAAGGTGGCTCCAGATATATTCCCCAACTTGGAGATGAAGTTGCGTATCTGAGGCAGGGCCATCATGAATACATAGATCACTGTTGTGCAAATTACTGTCAGACAAAAGACACGGGACCTTGGACCTCAAACCGAGGAACCATACGAGCTGTTGAGTTCTGTAAGGTTGTGGAGCTTGTTTATTCAACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCATCTTCCCATGTATACCGCCAATCCTTCAAGTTAACTCTGCCCGAGTTGACTAGTTTCCCTGACTTCTTAGTTGAAAGAACTCGGTTTGAAGCAGCAATGCAGAGGAATTGGACGTTCAGGGACAAGTGCAAAGTGTGGTGGAAAAATGATGTTGGAGTCGATGGTAGTTGGTGGGATGGTCGAATTGTCTCTGTGCAGGCAAAATCTCCTGAGTTCCCAGACAGTCCTTGGGAGAGGTACACAATTAAGTATAGGAGTGATCCTGCTGAACCACATTTACATAGTCCTTGGGAGCTGTATGATACTGTTACTCAGTGGGAACAGCCTAGAATAGATGATGAAAACAAAGCGAAGTTGTTAATGGCCATTGACAAATTAATGTCGCCCTCTATGCAGGGTCGTTATGGGATCCAAGATTTGATGCTTCTCTCACGGAAGACACAATACAAGAACAGGTTCCCTGTGCCATTGTGCCTTGAGATAATCCAGGAAAGATTACAGAACGATTACTACCGAAGCTTGGAAGCTTTGAAGCATGACTTCATGGTAATGCTATCAAATTTCGAGTCGTTTGTGGCAAAGAATGAAGACATGTCAAAGAAAATTAGACGCTTATCGGACTGGTTTGATCGCAACATATCACCTTTATAG 5190 42.45 MTNMALRKFVCGATPSINLKHSSFPIKLHEQTQFEEPETNQTLEPDVDIDPREVYFLIMHFLSSGPCRRTCGLLWEELFEHQLLPRRYHAWYSRNGMHSGHENDDGLSFPLSYQHLVERYPHVDKNHLIKLLKQLIHNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVGKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQNAPRIYVPRPLDSVTARNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIAKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLIEPLPDIVDAMDWGPENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKKQKADMEVMTSSGRRVKRRNMDEYEGDTVRSSRSRKLKSGHKPSKKKSASKSLRPQRAAARNARNWISSFKGKSTDGEEEYESGGDCSESESSLEDSDIESDEYERSLQNRNKHSKGKEVFLDGAEEITKSLDVPESRVDPGNRKKLILKFSLKNPNKVDPPSNTALTCSNMADVASSSSRSPKEVIETSQNLMRSERHFVNIDGHSDLTEVYTNGNIRWGGSRVRSSKRIRFGDTVPSDAYAVSTSLPNGDHNENENAVNEYLERENHFGAPSPLAGVQNYSADEMDAVSPTNLKYEDDNASGHSQEMVSGGELKCVSNSKSCDHDDSSNLNFVFSSVATTTSIQNGAPAPEQTENIAPMCTKIRFKSISLDPEHSLKHKIESLDESSKNDEYNTVSGSPQHIDGLQDNVMNETYSDHRNDCPQDMDIAMDEKPVSTLCNSSELQAVETNKMYTAVYKRSKSNKGKSNIDNNGCGSGEHASGNSSLPAEADNHKIMLRKTRSLRFKDSSYDLNNVGDDPKSDEDQELEQRSRRSGNSSANRSHIPIEEWGSSSRMTVGSRSTRNRRGTLAQDISPVDRRKSVQYPRKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHHEYIDHCCANYCQTKDTGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPSSHVYRQSFKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQAKSPEFPDSPWERYTIKYRSDPAEPHLHSPWELYDTVTQWEQPRIDDENKAKLLMAIDKLMSPSMQGRYGIQDLMLLSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL 1729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6480321 6520187 - ClCG05G006470.2 Cla05g00697 272187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00697 1729 SMART bromo_6 1625 1728 IPR001487 GO:0005515
Cla05g00697 1729 MobiDBLite consensus disorder prediction 1297 1324 - -
Cla05g00697 1729 MobiDBLite consensus disorder prediction 1226 1242 - -
Cla05g00697 1729 MobiDBLite consensus disorder prediction 1345 1367 - -
Cla05g00697 1729 Gene3D - 1623 1729 IPR036427 GO:0005515
Cla05g00697 1729 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Cla05g00697 1729 SUPERFAMILY WD40 repeat-like 232 655 IPR036322 GO:0005515
Cla05g00697 1729 MobiDBLite consensus disorder prediction 823 869 - -
Cla05g00697 1729 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Cla05g00697 1729 SUPERFAMILY Bromodomain 1661 1727 IPR036427 GO:0005515
Cla05g00697 1729 Pfam WD domain, G-beta repeat 393 421 IPR001680 GO:0005515
Cla05g00697 1729 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515
Cla05g00697 1729 Pfam WD domain, G-beta repeat 573 612 IPR001680 GO:0005515
Cla05g00697 1729 Pfam WD domain, G-beta repeat 236 273 IPR001680 GO:0005515
Cla05g00697 1729 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Cla05g00697 1729 CDD Bromo_WDR9_I_like 1605 1727 - -
Cla05g00697 1729 Gene3D - 211 387 IPR015943 GO:0005515
Cla05g00697 1729 MobiDBLite consensus disorder prediction 777 953 - -
Cla05g00697 1729 MobiDBLite consensus disorder prediction 1368 1405 - -
Cla05g00697 1729 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Cla05g00697 1729 PANTHER WD REPEAT DOMAIN 9 42 1728 - -
Cla05g00697 1729 Gene3D - 460 669 IPR015943 GO:0005515
Cla05g00697 1729 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 316 - -
Cla05g00697 1729 MobiDBLite consensus disorder prediction 870 887 - -
Cla05g00697 1729 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Cla05g00697 1729 Coils Coil 685 705 - -
Cla05g00697 1729 CDD WD40 237 612 - -
Cla05g00697 1729 SMART WD40_4 276 315 IPR001680 GO:0005515
Cla05g00697 1729 SMART WD40_4 433 498 IPR001680 GO:0005515
Cla05g00697 1729 SMART WD40_4 383 421 IPR001680 GO:0005515
Cla05g00697 1729 SMART WD40_4 572 612 IPR001680 GO:0005515
Cla05g00697 1729 SMART WD40_4 531 569 IPR001680 GO:0005515
Cla05g00697 1729 SMART WD40_4 318 358 IPR001680 GO:0005515
Cla05g00697 1729 SMART WD40_4 234 273 IPR001680 GO:0005515
Cla05g00697 1729 MobiDBLite consensus disorder prediction 791 815 - -
Cla05g00697 1729 ProSitePatterns Trp-Asp (WD) repeats signature. 599 613 IPR019775 -
Cla05g00697 1729 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 367 IPR001680 GO:0005515
Cla05g00697 1729 MobiDBLite consensus disorder prediction 1219 1242 - -
Cla05g00697 1729 Pfam Bromodomain 1660 1714 IPR001487 GO:0005515
Cla05g00697 1729 Gene3D - 388 459 IPR015943 GO:0005515
Cla05g00697 1729 MobiDBLite consensus disorder prediction 1297 1325 - -
Cla05g00697 1729 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 42 1728 - -
Cla05g00697 1729 MobiDBLite consensus disorder prediction 938 953 - -
Cla05g00697 1729 MobiDBLite consensus disorder prediction 1345 1417 - -
Cla05g00697 1729 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 621 IPR001680 GO:0005515
Cla05g00697 1729 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 361 - -
Cla05g00697 1729 MobiDBLite consensus disorder prediction 916 937 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00697 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 3224.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00697 Cla-Chr5:6480321 Cla08g00899 Cla-Chr8:21472502 3.42E-11 dispersed
Cla05g00697 Cla-Chr5:6480321 Cla09g00656 Cla-Chr9:6239084 8.91E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00697 Cla_Chr05 FPKM 22.820713 22.027452 30.020992 25.585051 18.687035 17.871811 19.815426 12.974339 12.233492 13.439635