Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00705 ATGCAAGTCTTCTCTTCTTCTCCTTCAACCGCAAGCTTCAATCTCTTCTCTTCCTCTCAGAATTCGACCAATTTGTTGAAGTACAGATGCAAAGTCTCCATTATACCCCTACATGCTGCCCCCAATTCCATCTCCGTTCCGCCGTGCTGTTCTTCGAGGGACTCCTCGACGGCGGTTCTCGTCGCCGATCGATCATCGGACGGGGCGAACAGAGAATCGTCCGAGGAGGTAATTAGGATTCGGCGGCCAGTTATGGAGTTTCCCGGCGAAGATTCCGGCGACGGCAAGGATGAGGAAACGGAAGTTGACAGTACATCTTCGATGATAGATGTAAGGTTAACGGAGATCGCGAAGAAGATGCCGATTTTTGAACCGGAGGATCGAGTGGATTCGAGCGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTACAGAGCGAAGATGTTGGCGAGGAATTTTCAGTATGATGAAGCACAACAAGTCCTTCGGAAGTGTATAAATAAATGGCCGGAGGATGGGCGGGCTTATGTAGCATTGGGGAAGATGTTGGGGAAGCAAATGAAAGCAGCTGAAGCAAAAGCCGTGTATGAGAGAGGCTGCCAAGCCACGCAAGGAGAGAACTCCTACATTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAACATCAGGAAGGCGAGAGAGCTGTTCGATGCAGCCACAGTAGCCAACAAGAAGCACATTGCAGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAAGGGAACATCAAGAAGGCCAGGAATTTACTCGCCAAAGGCCTCAAATACTGTGGTGGAAATGAGTATATTTATCAGACACTTGCGCTGCTCGAAGCCAAATCGAATCGGTTCGAGCAGGCTCGATATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAGAGCTGTGCTAGTTGGCTTGCATGGTCGCAGCTGGAGATGCAGCTGGAAAACAACCTTCTTGCTAGAGAACTATTTGAGAAAGCCATCCAGGCCAGCCCCAAGAACAGATTTGCGTGGCATATATGGGGACTCTTTGAAGCCAATATGGGAAATATCGAAAAGGGAAGGAAACTTTTAAAGATAGGCCACGTCCTCAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTGGAGTATAAGAACTCCTCTGCAAGCCTTGCTCGAGTTTTGTTTAGGCGAGCATCTGAACTGGATCCAAAGCATCAGCCTGTCTGGATTGCATGGGGATGGATGGAATGGAAAGAAGGAAACATAGTGAAAGCAAGGGAGCTATATCAAAGAGCATTGTTAATTGACTCAGCTAGTGAGAGTGCAGCTAGATGCCTTCAGGCTTGGGGTGTTCTGGAACAGAGAGTAGGCAATCTATCAGCAGCAAGAAGATTATATAGATCCTCTCTAAACATAAATTCTCAAAGTTATGTAACATGGATGACATGGGCAGCATTGGAAGAGGATCAAGGGAATGCAATCCGAGCTGAGGAAATTCGAAATCTCTATTTCCAGCAGCGAACTGAAGTTGTGGATGATGCTTCATGGGTTATGGGATTTTTAGACGTTATTGACCCAGCACTGGACAGCATAAAGAGATTGTTGAAGCTGGAGCAAGACCCATTCACCGCGTCTAGAACAGCAGATGGAGGCCCTCGAAACGCCTCCATAGACGACGCGGCTGCCTCCTCTTCTGACAAGAAATGGCTGTTTCACAAAGCCAAAGAACAGAATCATCATCAGGATAATTGCTACATTGTGAAGGCAATACAAGCCAATTTTAATCAACTATCTGATTTCAAAAGTATATCATATCTGATGTTTGCTAAGCATTACATGACTGGCTTATGGGAAGTCAAACTTGGGCTCACTTGTCATTGTTGTCTTCGCCAATCTCATCGTTGTCATTTGTCACGATGGCTGCCACCAACTCCTGTCACTCTTGCTTTCCTCCTTCACATATTATTCATTTCTAACCGATGTTGGCAACGACACGGAGGTGGAGATCTTGACGAAAATGAGGGCTCTATGGATGATGTTGGTGGAATGGACAACGGAGTGTTGAAAGAAGGGAAAATCTTCTAA 2112 46.92 MQVFSSSPSTASFNLFSSSQNSTNLLKYRCKVSIIPLHAAPNSISVPPCCSSRDSSTAVLVADRSSDGANRESSEEVIRIRRPVMEFPGEDSGDGKDEETEVDSTSSMIDVRLTEIAKKMPIFEPEDRVDSSALERPLIINLDLALYRAKMLARNFQYDEAQQVLRKCINKWPEDGRAYVALGKMLGKQMKAAEAKAVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLALLEAKSNRFEQARYLFKQATKCNPKSCASWLAWSQLEMQLENNLLARELFEKAIQASPKNRFAWHIWGLFEANMGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARVLFRRASELDPKHQPVWIAWGWMEWKEGNIVKARELYQRALLIDSASESAARCLQAWGVLEQRVGNLSAARRLYRSSLNINSQSYVTWMTWAALEEDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGFLDVIDPALDSIKRLLKLEQDPFTASRTADGGPRNASIDDAAASSSDKKWLFHKAKEQNHHQDNCYIVKAIQANFNQLSDFKSISYLMFAKHYMTGLWEVKLGLTCHCCLRQSHRCHLSRWLPPTPVTLAFLLHILFISNRCWQRHGGGDLDENEGSMDDVGGMDNGVLKEGKIF 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6576749 6585111 - ClCG05G006550.2 Cla05g00705 272195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00705 703 Pfam Tetratricopeptide repeat 285 346 - -
Cla05g00705 703 Gene3D Tetratricopeptide repeat domain 213 515 IPR011990 GO:0005515
Cla05g00705 703 SMART hat_new_1 395 427 IPR003107 GO:0006396
Cla05g00705 703 SMART hat_new_1 259 291 IPR003107 GO:0006396
Cla05g00705 703 SMART hat_new_1 361 393 IPR003107 GO:0006396
Cla05g00705 703 SMART hat_new_1 429 464 IPR003107 GO:0006396
Cla05g00705 703 SMART hat_new_1 466 498 IPR003107 GO:0006396
Cla05g00705 703 SMART hat_new_1 293 325 IPR003107 GO:0006396
Cla05g00705 703 SMART hat_new_1 190 223 IPR003107 GO:0006396
Cla05g00705 703 SMART hat_new_1 225 257 IPR003107 GO:0006396
Cla05g00705 703 SMART hat_new_1 327 359 IPR003107 GO:0006396
Cla05g00705 703 MobiDBLite consensus disorder prediction 62 106 - -
Cla05g00705 703 SUPERFAMILY TPR-like 332 519 IPR011990 GO:0005515
Cla05g00705 703 SUPERFAMILY TPR-like 158 391 IPR011990 GO:0005515
Cla05g00705 703 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 36 570 IPR044624 GO:0003729|GO:0006397
Cla05g00705 703 MobiDBLite consensus disorder prediction 68 91 - -
Cla05g00705 703 Gene3D Tetratricopeptide repeat domain 140 212 IPR011990 GO:0005515
Cla05g00705 703 ProSiteProfiles TPR repeat profile. 279 312 IPR019734 GO:0005515
Cla05g00705 703 SMART tpr_5 245 278 IPR019734 GO:0005515
Cla05g00705 703 SMART tpr_5 452 485 IPR019734 GO:0005515
Cla05g00705 703 SMART tpr_5 415 448 IPR019734 GO:0005515
Cla05g00705 703 SMART tpr_5 381 414 IPR019734 GO:0005515
Cla05g00705 703 SMART tpr_5 176 209 IPR019734 GO:0005515
Cla05g00705 703 SMART tpr_5 313 346 IPR019734 GO:0005515
Cla05g00705 703 SMART tpr_5 279 312 IPR019734 GO:0005515
Cla05g00705 703 SMART tpr_5 142 175 IPR019734 GO:0005515
Cla05g00705 703 SMART tpr_5 211 244 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00705 - - - csv:101215572 1058.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00705 Cla-Chr5:6576749 Cla06g00236 Cla-Chr6:2917549 4.89E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00705 Cla_Chr05 FPKM 0.915591 0.725214 1.681292 1.449096 4.387772 4.09268 3.403906 1.16737 1.525396 1.421782