Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00709 ATGGCTGATTCACCCTCGAATTCCCTAGTCAAACCGATTCACATCGCATTCGCGATCGCTTTTGCTCTGTTAATCTCATCTCCGATCGGTTCTTATGCCTTTACTGCACAAAATGTTATCGACTCGCCGTTGTTGACGAAGAAGATCGGTACAAATCGAACGATCAAGGTCGATATCAATGGAAATGGCGAATTCACGTCCATTCAAGCTGCAGTCGATTCTGTTCCGGAAGGGAATTCGCAGTGGATAATCATCCATGTTAGGAAAGGAATTTACAGAGAGAAGGTTCATATTCCGTCGAGTAAGCCGTACATCTTCTTGAGGGGGAACGGAAAAGGAAGAACGTCCATCGTTTGGTCACAGAGCTCTAATGATAACATTGAATCTGCTACTTTTAAAATTGAAGCTCAACATTTCATTGCTTTTGGAATTAGCTTCAAGAATGAGGCTCCTACTGGTGTGGCTTACACATCGCAAAATCAGTCGGTAGCGGCATTCGTTGCCGCGGATAAAGTTGCATTTTACCACTGTGGATTCTATAGCACTCACAATACACTGTTCGATTATAAAGGCAGACATTATTATGACGGTTGCTACATTCAAGGCTCAATTGATTTCATCTTTGGCCGCGGCAGATCCGTCTTCCATAGTTGTGAGATGTTTGTGATTGATGACAAGAGATTGAAGATCCGTGGTTCAATCACAGCTCAAAACAGAAAGAGTGCAAATGAGAACAGTGGGTTTGTTTTCATTAAAGGAAAGGTTTACGGAATTGGCGGTGTGTATTTGGGCAGAGCAAAAGGTGCATTTTCCAGAGTCATTTTTGCTAAAACTTACCTCTCCATGACTGTTATTCCTGCCGGTTGGACCAATTGGAGCTATGGCGGCAGCACAGAGAATCTGTTCCATGCAGAATATGATTGTCATGGACCAGGATCAGAATCAGGACACCGTGCGCCATGGGCTAAACAACTAACTAAGGAAGAAGTTGCCCCGTTCATGGAAACTCTGCCACCGATTCCTCCCCCGGAACCGCCGCCAAAGCCTCCTCCTCCACCTGCTCCTCCTCCAAATCCACCTCCTTTGCCACCTCCGAAACCACCTCCTGCTCCGCCTCCATGGCCACCTCCAGCTCCGCCTCCAAACCCACCTCCTGCTCCACCACCAGCTCCGCCTCCTGCTCCGCCTCCAAATCCACCTCCTTTACCACCTCCAAATCCACCTCCCGCTCCGCCACCAGCTCCACCGCCAGCTCCGCCTCCAAATCCACCTCCTGTTCCACCACCAGCTCCACCTCCTGCTCCGCCTCCAAACCCGCCTCCCTTACCACCTCCAAATCCACCTCCAGCTCCACCTCCAGCTCCGCCACCAACTCCGCCTCCGAATCCACCCCCCTTACCACCTCCAAATCCACCTCCAGCTCCACCTCCTGCTCCGCCACCAGCTCCGCCTCCAAATCCACCTCCCTTACCACCTCCAAATCCACCTCCAGCTCCGCCTCCTAATCCACCTCCTCCTCCTAATCCCCCCCCGCCACCGGCTCCGCCTCCTAATCCACCTCCTCCTCCTAAGCCACCTCCACCACCAACTCCGCCTCCTAATCCACCTCCATGCCCACCTCCGAAACCAAGACCAAGGCCGCCTCCAGCTCCACCTCCAAGCCCAACGCCACCACCAAGCGTCTCCTTCTCCAACTTTCTGCTTTCAGCCAATCCTACAACCAGCACTGCCAGAACAAGAGCCAACGCTCCATTCCTAAATGTAAATTTGGCCATACTCTTATCTTAA 1788 51.4 MADSPSNSLVKPIHIAFAIAFALLISSPIGSYAFTAQNVIDSPLLTKKIGTNRTIKVDINGNGEFTSIQAAVDSVPEGNSQWIIIHVRKGIYREKVHIPSSKPYIFLRGNGKGRTSIVWSQSSNDNIESATFKIEAQHFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKVAFYHCGFYSTHNTLFDYKGRHYYDGCYIQGSIDFIFGRGRSVFHSCEMFVIDDKRLKIRGSITAQNRKSANENSGFVFIKGKVYGIGGVYLGRAKGAFSRVIFAKTYLSMTVIPAGWTNWSYGGSTENLFHAEYDCHGPGSESGHRAPWAKQLTKEEVAPFMETLPPIPPPEPPPKPPPPPAPPPNPPPLPPPKPPPAPPPWPPPAPPPNPPPAPPPAPPPAPPPNPPPLPPPNPPPAPPPAPPPAPPPNPPPVPPPAPPPAPPPNPPPLPPPNPPPAPPPAPPPTPPPNPPPLPPPNPPPAPPPAPPPAPPPNPPPLPPPNPPPAPPPNPPPPPNPPPPPAPPPNPPPPPKPPPPPTPPPNPPPCPPPKPRPRPPPAPPPSPTPPPSVSFSNFLLSANPTTSTARTRANAPFLNVNLAILLS 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6607335 6613444 - ClCG05G006580.2 Cla05g00709 272199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00709 595 MobiDBLite consensus disorder prediction 335 560 - -
Cla05g00709 595 PRINTS Proline rich extensin signature 339 355 - -
Cla05g00709 595 PRINTS Proline rich extensin signature 356 373 - -
Cla05g00709 595 PRINTS Proline rich extensin signature 376 401 - -
Cla05g00709 595 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 335 - -
Cla05g00709 595 PANTHER PECTINESTERASE 67-RELATED 13 335 - -
Cla05g00709 595 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Cla05g00709 595 SUPERFAMILY Pectin lyase-like 51 334 IPR011050 -
Cla05g00709 595 Pfam Pectinesterase 56 330 IPR000070 GO:0030599|GO:0042545
Cla05g00709 595 MobiDBLite consensus disorder prediction 334 580 - -
Cla05g00709 595 MobiDBLite consensus disorder prediction 561 580 - -
Cla05g00709 595 Gene3D - 49 337 IPR012334 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00709 - - - csv:101215809 619.002
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00709 Cla-Chr5:6607335 Cla07g00840 Cla-Chr7:23283064 1.00E-69 dispersed
Cla10g01100 Cla-Chr10:25248923 Cla05g00709 Cla-Chr5:6607335 2.08E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g60 . . . . . . . . . . . Cma14g01588 . Car14g01398 Sed02g1135 . Cpe03g01325 Bhi01g01093 Tan10g1080 Cmetu06g1917 . Hepe05g1373 . Lcy11g1335 . . . . . . . . . . Cone4ag0104 Lsi05g01418 . . Cme06g00792 . Blo07g00142 . . . Bpe13g00699 . . . . Cmo14g01618 . . . . . . . . . . . . . Cla05g00709 Cam05g0776 Cec05g0784 Cco05g0777 Clacu05g0766 Cmu05g0732 Cre05g0806 . Csa03g01521 Chy06g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012037 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00709 Cla_Chr05 FPKM 21.539507 23.073267 14.308265 13.071405 9.138341 8.751348 10.852244 18.562279 19.475163 19.826239