Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00710 ATGAACAGAGTATACGGAATTCAACAGAAAATATTAAGGCTTTTAAGCTATATACAGAGTACCGAATTCATCTCCATGTCCTTCACAGCAGGCCGCTTTAACTGTGCCCCTCATTTTCTCAAGGTTGGTGACGGTGTGACACAGCATTTAATGGTCTCTTCTGTTTCTTCTAGCTTTGAATCAGTACACAGCCAAAAGAAAGTTAAAAGGGAAGACTCAAGAAACTGCTTTGCTAATTTTGTGTTTGGGGATTCATTGGTGGAGGTTGGAAACAACAACTACATTCCATCACTCTCCCGGGCCAACTATGTCCCAAACGGCATCGATTTCGGAAGACCGACTGGTCAGGAGCTTGGGTTCAAGACATTCACTCCCCCGTACTTGGCACCTTCCACGACCGGAGCAGTGATTCTTCAAGGCGTTAACTATGCTTCTGGTTCAGCTGGAATCTTAAACAACACAGGAAAAATCTTTATTGCTCGAATCAACATGGATGCACAACTCGATAACTTTGCAAATACCAGACAAGATATCATCTCCATGATTGGCCTTCCTGCTGCCATAGATTTGCTTAGAACTTCCATTTTCTCCATAACCATTGGCTCAAATGACTTCATTAATAACTATTTTACACCAGCCTTCTCTGATTCAGGACACCGGTTGATTCCTCCAGAGTTGTTTGTTGGCTCCATGATTTCAAGATACAGACTCCAACTCGCAAGACTCTACAATCTAGGAGCCAGAAAGATCATAGTGGTGAACGTCGGACCAATCGGATGCATTCCATATCAGAGAGATTCAAATCCTTCATTAGGAAATAACTGTGCAAATTCCCCTAACCTAATGGCTCAGTTATTCAACAACCAATTGAGAGGTCTACTCACAGAGCTCGGTGCCCGATTTCAGGATTCGAATTTCCTTTACGCAGATGCATTTCGCATCGTTCAAGATATAGTTCAGAATCACGCAACATACGGGTTTGAGAATGCCGACTCCGCATGCTGCCACATCGCCGGGCGGTACGGTGGCCTGTTTCCCTGTGGACCGCCGTCGAAAGTGTGTGTAGACAGATCGAAGTACGTGTTTTGGGATTCATTTCATCCTTCTGAAGCTGCGAACTCCATCATCGCCGGGCGGCTATTGAACGGCGACGCCATTGATATTTGGCCCATCAATATTCGAGAACTAGAACGTCGTAATTAA 1203 44.64 MNRVYGIQQKILRLLSYIQSTEFISMSFTAGRFNCAPHFLKVGDGVTQHLMVSSVSSSFESVHSQKKVKREDSRNCFANFVFGDSLVEVGNNNYIPSLSRANYVPNGIDFGRPTGQELGFKTFTPPYLAPSTTGAVILQGVNYASGSAGILNNTGKIFIARINMDAQLDNFANTRQDIISMIGLPAAIDLLRTSIFSITIGSNDFINNYFTPAFSDSGHRLIPPELFVGSMISRYRLQLARLYNLGARKIIVVNVGPIGCIPYQRDSNPSLGNNCANSPNLMAQLFNNQLRGLLTELGARFQDSNFLYADAFRIVQDIVQNHATYGFENADSACCHIAGRYGGLFPCGPPSKVCVDRSKYVFWDSFHPSEAANSIIAGRLLNGDAIDIWPINIRELERRN 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6617465 6619336 + ClCG05G006600.2 Cla05g00710 272200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00710 400 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 68 397 - -
Cla05g00710 400 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 68 397 - -
Cla05g00710 400 CDD SGNH_plant_lipase_like 78 384 IPR035669 -
Cla05g00710 400 SUPERFAMILY SGNH hydrolase 185 382 - -
Cla05g00710 400 Gene3D SGNH hydrolase 65 383 IPR036514 -
Cla05g00710 400 Pfam GDSL-like Lipase/Acylhydrolase 80 377 IPR001087 GO:0016788
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00710 - - - csv:101216051 619.002
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01294 Cla-Chr2:26932441 Cla05g00710 Cla-Chr5:6617465 1.69E-104 dispersed
Cla05g00710 Cla-Chr5:6617465 Cla05g01213 Cla-Chr5:13615799 5.53E-79 dispersed
Cla05g00710 Cla-Chr5:6617465 Cla01g02352 Cla-Chr1:37265796 7.41E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g58 . . . . . . . . . . . Cma14g01587 . Car14g01397 . . Cpe03g01324 Bhi01g01094 . . . . . Lcy11g1334 . . . . . . . . . . Cone4ag0103 . . . Cme06g00793 . Blo07g00140 . . . Bpe13g00700 . Bma06g01464 . . Cmo14g01617 . . . . . . . . . . . . . Cla05g00710 . . Cco05g0778 Clacu05g0767 Cmu05g0733 Cre05g0807 . Csa03g01522 Chy06g00758 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014157 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00710 Cla_Chr05 FPKM 3.818792 3.638382 0.0 0.0 3.103951 3.693205 2.612604 0.0 0.0 0.0