Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00716 ATGGAAAAGAAATTTGAAGACTCACTGATGGGGTTTGATAATTCTGCTGGATTTTACTCTCCGGCGGTGTTTTCCGATGAGTTTCCGGCGTCGAATTTTGATTCTTTTTCCAGTATTTTCGACATGCCATGTGATGACCATAAAGCTTCTGCTGCTGCTTCTTGTTCTTCTAATTCCTTTGACTTATTTAGTAGTGGAATTGAAATCCATGATTTTTACAATATTAATAATAATGATGATAATAATAATAATATTCCTTCTTCTTCTTCTTCTAATTTCTTCAATTTGCTTTCTACGGCGGCTCCGCCTCTTTCCTCACCGGCCTCCACCGTGCCGGAGTCCTCCGAGGTTCTTAATGCTCCACCCACTCCTAATTCTTCCTCTGTTTCTTCCTCCTCCAATGAAGCTACAGCTGCCATTCAAGAAGTTGACAAGATCAACAACAACACTGAGAAGCCTTCTTCTTCTAAAGTGTTGAAGCCAAAAAAGAAGAACCAGAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGATGGTTACCGATGGCGAAAGTACGGTCAAAAAGCGGTGAAGAACAGCCCTTATCCTAGAAGCTATTATCGTTGTACGACGGCAGGGTGCGATGTGAAGAAGAGAGTAGAACGATCGTCCGGCGACCATTCGATAGTTGTTACGACGTACGAAGGTCAACACACTCACCAAAGTCCGGTAATGCCGCGAGGAAGTATCAGAGTTTTACCAGAATCCACCAACAACAGTCTCATCGCGGATCACGACACCATCGCCACTGGACTTTTATTCCAACACAACACTACCCAACCCTTCATATGTAGCTCTCCACCGCCGCCATTTCTAACAATCAACTCGTCGGTGGCGGCGGGAAGTTCCCGTCCTGCTCCTCCTCCTACTTCCTTCCCGCCACCACCGTCTCAAGCTTCTTTGGTCCGAGACCATGGGCTTTTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGGATGA 1047 45.08 MEKKFEDSLMGFDNSAGFYSPAVFSDEFPASNFDSFSSIFDMPCDDHKASAAASCSSNSFDLFSSGIEIHDFYNINNNDDNNNNIPSSSSSNFFNLLSTAAPPLSSPASTVPESSEVLNAPPTPNSSSVSSSSNEATAAIQEVDKINNNTEKPSSSKVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCDVKKRVERSSGDHSIVVTTYEGQHTHQSPVMPRGSIRVLPESTNNSLIADHDTIATGLLFQHNTTQPFICSSPPPPFLTINSSVAAGSSRPAPPPTSFPPPPSQASLVRDHGLLQDLVPLQMRKEPKDEQNG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6696711 6699482 + ClCG05G006660.1 Cla05g00716 272206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00716 348 MobiDBLite consensus disorder prediction 296 348 - -
Cla05g00716 348 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 58 333 IPR044810 GO:0003700
Cla05g00716 348 MobiDBLite consensus disorder prediction 105 155 - -
Cla05g00716 348 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 58 333 - -
Cla05g00716 348 Pfam WRKY DNA -binding domain 186 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00716 348 SUPERFAMILY WRKY DNA-binding domain 177 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g00716 348 Gene3D WRKY domain 170 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla05g00716 348 MobiDBLite consensus disorder prediction 105 174 - -
Cla05g00716 348 SMART WRKY_cls 185 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla05g00716 348 ProSiteProfiles WRKY domain profile. 180 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g00716 Cla06g00419 CCT
Cla05g00716 Cla06g00419 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00716 Cla-Chr5:6696711 Cla08g01030 Cla-Chr8:23025947 1.00E-45 dispersed
Cla10g01103 Cla-Chr10:25306121 Cla05g00716 Cla-Chr5:6696711 1.01E-46 wgd
Cla05g00716 Cla-Chr5:6696711 Cla06g00419 Cla-Chr6:5093567 1.32E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61039 PF03106 WRKY 9.20E-26 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00716 - - bhj:120088001 500.36