Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00719 ATGCATACTTGTAGTTCTCTGGGAATTTCTACCATGAAACCTTGTAGGATTCTTATTGGCTTCAAATCCTCTTCGATGTTTGGAACAATCGCATCGCCCAAGCTGAAGTATAAGAGGATCAGTAGATTATCGAAATTAGAGTCTAATGGATGTAAAATTATAGGGTCTGTACAGGTTGTTGATAATTTGAATAGGAGATGTTTTAGTTTTTGTAATGGTTATCGGTTGTATAAAGGTAACAGTGGTAGAAATAGGTGTTTGATTGCCAATGTAGCGTCAGATTTTAGAAATCAGTCGACATCGGCGGAGCCTCATGTCAAACAGAAGAGCTTTGACACAATTTATATTCAAGGAGGGTTTAAGGTTAAGCCATTGGTGATTGAGAGTATTGAGACAGATCATGATATTGTTAAAGAAGATAAAAATGTGTCTGGGGTTGAGGGATTGGGTAGTTTGAAGGGTTCTAGTTACTCTAGAGTTGAGAGAGAGATGTCCGAGGTTGAAAAGGAGGCATGGAAATTGCTTCGAGATTCTGTTGCGTACTATTGTGGACATCCTGTTGGAACTGTTGCTGCTAATGATCCAGCTGATACTCAGCCACTGAATTACGACCAGGTCTTTGTTCGTGATTTTGTACCATCGGCCTTGGCATTCTTGTTAAATGGAGAAGAGGAGATTGTCAGGAATTTTCTCCTTCACACCTTGCAATTACAGAGTTGGGAGAAAACTGTTGACTGTTACAGCCCTGGACAAGGGTTGATGCCAGCAAGTTTCAAAGTCAGAAGCCAACCTCTTGATGGAAGCGATGGAGCTTTTGAGGAAGTTCTTGATCCTGATTTTGGTGAATCTGCCATTGGTCGTGTTGCACCGGTTGATTCTGGGTTGTGGTGGATTATTTTGTTAAGAGCTTATGGAAAGATCACAGGAGACTACACATTGCAGGAACGAGTCGATGTACAGACAGGCATAAGACTCATCCTTAATCTCTGCTTGACGAATGGGTTTGACATGTTTCCTACTCTGTTGGTCAGTGATGGTTCCTGCATGATTGATAGACGAATGGGCATTCATGGACACCCACTTGAAATTCAAGCATTGTTCTATTCGGCCTTACGCTGCTCCAGAGAGATGCTGATTGTTAACGACTCAACTAAGAATCAGGTGGTTGCCCTCAACAATAGACTCAGTGCGCTCTCCTTCCATATCCGGGAATATTACTGGGTCGATAAGGATAAAATCAATGAAATTTATCGTTACAAAACAGAGGAATATTCTACTGATGCTGTGAACAAGTTCAATATATATCCTGAACAAATCCCTAGTTGGCTGGTGGACTGGATACCTGAGGAGGGTGGCTACCTTATTGGCAATCTACAGCCTGCTCACATGGACTTTAGGTTTTTTACACTCGGAAATCTTTGGTCCATCGTGTCATCACTGGGGACTCCAAAACAGAATGAGGGCATCTTGAACTTGATTGAAGCCAAATGGGAGGATCTTGTAGCTAACATGCCTCTCAAGATATGCTTCCCAGCTATGGAGTATGACGAATGGCGCATAATAACTGGCAGCGACCCTAAGAACACTCCTTGGTCATATCATAATGGAGGAACTTGGCCAACACTCTTGTGGCCGGTGAGGGACTTGTTCTTATTCAAACTTCTTTCAACCTTTACCTCGAAACTCTTAACATGCTTGATTGGTAACCATTTTTTGTGGACATGTTTACAGTTCACACTGGCCTGCATGAAAATGGGGAGGCCAGAACTAGCAAGGAATGCCGTTGCAGTGGCTGAGAAGAAGCTTTCAGTCGATCGTTGGCCCGAGTACTACGATACGCGCAGTGCAAGATTAATAGGGAAGCAATCACGACTCTTCCAAACATGGACGATTGCTGGTTTCTTGACGTCGAAGTTGCTTTTGGAGAACCCAGAGAAGGCGTCTTTGTTGTTCTGGGAGGAGGATTACGAGATTCTTCAGAACTGCGTTTGTGCACTCGGCAAAGCCAATGGAAACAAGTGCTCTCGCCATCGTCATCGCCAGCATCTGAAACCCAATTATCTCAACCATTAA 2073 43.22 MHTCSSLGISTMKPCRILIGFKSSSMFGTIASPKLKYKRISRLSKLESNGCKIIGSVQVVDNLNRRCFSFCNGYRLYKGNSGRNRCLIANVASDFRNQSTSAEPHVKQKSFDTIYIQGGFKVKPLVIESIETDHDIVKEDKNVSGVEGLGSLKGSSYSRVEREMSEVEKEAWKLLRDSVAYYCGHPVGTVAANDPADTQPLNYDQVFVRDFVPSALAFLLNGEEEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRSQPLDGSDGAFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYTLQERVDVQTGIRLILNLCLTNGFDMFPTLLVSDGSCMIDRRMGIHGHPLEIQALFYSALRCSREMLIVNDSTKNQVVALNNRLSALSFHIREYYWVDKDKINEIYRYKTEEYSTDAVNKFNIYPEQIPSWLVDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNEGILNLIEAKWEDLVANMPLKICFPAMEYDEWRIITGSDPKNTPWSYHNGGTWPTLLWPVRDLFLFKLLSTFTSKLLTCLIGNHFLWTCLQFTLACMKMGRPELARNAVAVAEKKLSVDRWPEYYDTRSARLIGKQSRLFQTWTIAGFLTSKLLLENPEKASLLFWEEDYEILQNCVCALGKANGNKCSRHRHRQHLKPNYLNH 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6748940 6751810 - ClCG05G006700.2 Cla05g00719 272209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00719 690 SUPERFAMILY Six-hairpin glycosidases 178 636 IPR008928 GO:0005975
Cla05g00719 690 PANTHER - 6 545 IPR024746 GO:0033926
Cla05g00719 690 PANTHER - 576 682 IPR024746 GO:0033926
Cla05g00719 690 Gene3D - 199 542 IPR012341 GO:0005975
Cla05g00719 690 Pfam Alkaline and neutral invertase 171 546 IPR024746 GO:0033926
Cla05g00719 690 Pfam Alkaline and neutral invertase 573 644 IPR024746 GO:0033926
Cla05g00719 690 Coils Coil 157 177 - -
Cla05g00719 690 PANTHER ALKALINE/NEUTRAL INVERTASE C, MITOCHONDRIAL 576 682 - -
Cla05g00719 690 PANTHER ALKALINE/NEUTRAL INVERTASE C, MITOCHONDRIAL 6 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00719 - - - csv:101218588 1230.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01460 Cla-Chr2:29129126 Cla05g00719 Cla-Chr5:6748940 0 dispersed
Cla05g00719 Cla-Chr5:6748940 Cla05g02206 Cla-Chr5:33761589 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g29 . . . . . Bpe14g01086 . . . . . Cma14g01577 . Car14g01389 Sed02g1125 . Cpe03g01317 Bhi01g01103 Tan10g1091 Cmetu06g2133 . Hepe05g1362 . Lcy11g1325 . . . . . . . . . Cone7ag0090 Cone4ag0096 Lsi05g01408 . . Cme06g00802 Blo02g00469 . . . . . Bma02g00939 . . . Cmo14g01610 . . . . . . . . . . . . . Cla05g00719 Cam05g0788 Cec05g0793 Cco05g0791 Clacu05g0778 Cmu05g0742 Cre05g0818 . Csa03g01532 Chy06g00769 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002344 1 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 4 2 2 2 1 2 2 2 2 2 3 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00719 Cla_Chr05 FPKM 46.729309 50.614021 161.08786 153.237885 10.205877 11.449479 11.123341 143.673447 143.016266 137.84314