Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00723 ATGGCTTCCATGGCTCAGCAGTTTACTGGGTTGCGATGCGTGCCTCTTTCTTCATCGCGTCTCTCGAACCCATTTTCTTCCAGGCATTTGCAGAACAAGGCCCGCTCGCTTCCGGTTCAAGCTGCAGTCATTTCGGGCCCCATTCCCAGTCCACAGACTAAGGAGCGTTTCAAGCTCAAGGAGGTCTTCGAGGAGGCCTACGAACGCTGCCGTAATGCCCCTGTAGAAGGCATAGCCTTCACTCTCGAGGACTTCCATGCCGCTCTTGAAAAATACGACTTCGATTCTGAATTGGGAACTAAGGTGAAAGGTACTGTGTTTTGTACGGACAATAATGGAGCGCTTGTTGACATTACTGCCAAGTCATCTGCATATTTGCCAGTGCAAGAGGCTTGCATTCACAGAATAAAACATGTAGAAGAAGCAGGAATATTTCCTGGTTTGAGGGAGGAGTTTGTTATTATTGGTGAGAATGAAGCTGATGATAGCTTGATTTTGAGCTTGAGATCCATTCAATATGACTTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGACGTTGTTGTCAAGGGTAAGGTGATTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTTGTCCCTTTCTCACAGATATCAACGAAATCAGCGGCTGAAGAGCTTCTCAACAAGGAGCTTCCTCTAAAGTTTGTGGAGGTTGATGAAGAACAATCAAGACTTGTCCTCAGTAACCGTAAGGCCATGGCTGACAGCCAGGCCCAACTTGGAATTGGATCAGTGGTCACTGGGACGGTTCAAAGCCTTAAACCATATGGTGCATTCATTGACATTGGTGGAATTAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGATCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTCATGATATTGAGTCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAGTTAGAGCCTACTCCTGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCACAAACGTTCAGGCAAAGAATAGCCCAAGCAGAGGCAATGGCACGCGCAGACATGCTTAGGTTTCAGCCTGAGAGTGGTTTGACTTTGACTACTGATGGAATATTGGGACCAATTACCCCAGAGTTGCCTGTAGAAGGTTTAGATTTAAATGATGTACCTCCAGCTGAAGAGTGA 1242 46.78 MASMAQQFTGLRCVPLSSSRLSNPFSSRHLQNKARSLPVQAAVISGPIPSPQTKERFKLKEVFEEAYERCRNAPVEGIAFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALVDITAKSSAYLPVQEACIHRIKHVEEAGIFPGLREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQAEDVVVKGKVIDANKGGVVAVVEGLRGFVPFSQISTKSAAEELLNKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLTTDGILGPITPELPVEGLDLNDVPPAEE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6813697 6817978 + ClCG05G006720.1 Cla05g00723 272213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00723 413 CDD S1_RPS1_repeat_ec1_hs1 99 169 - -
Cla05g00723 413 ProSiteProfiles S1 domain profile. 99 169 IPR003029 GO:0003676
Cla05g00723 413 Gene3D - 258 336 IPR012340 -
Cla05g00723 413 ProSiteProfiles S1 domain profile. 264 332 IPR003029 GO:0003676
Cla05g00723 413 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 413 - -
Cla05g00723 413 ProSiteProfiles S1 domain profile. 187 251 IPR003029 GO:0003676
Cla05g00723 413 SUPERFAMILY Nucleic acid-binding proteins 182 255 IPR012340 -
Cla05g00723 413 Pfam S1 RNA binding domain 263 332 IPR003029 GO:0003676
Cla05g00723 413 Pfam S1 RNA binding domain 185 249 IPR003029 GO:0003676
Cla05g00723 413 SMART S1_6 185 251 IPR022967 -
Cla05g00723 413 SMART S1_6 97 169 IPR022967 -
Cla05g00723 413 SMART S1_6 262 332 IPR022967 -
Cla05g00723 413 CDD S1_RPS1_repeat_hs4 264 332 - -
Cla05g00723 413 Coils Coil 349 369 - -
Cla05g00723 413 SUPERFAMILY Nucleic acid-binding proteins 94 194 IPR012340 -
Cla05g00723 413 CDD S1_RPS1_repeat_ec2_hs2 187 251 - -
Cla05g00723 413 Gene3D - 82 180 IPR012340 -
Cla05g00723 413 Gene3D - 181 257 IPR012340 -
Cla05g00723 413 PANTHER 30S RIBOSOMAL PROTEIN S1 1 413 - -
Cla05g00723 413 SUPERFAMILY Nucleic acid-binding proteins 263 342 IPR012340 -
Cla05g00723 413 PRINTS Ribosomal protein S1 signature 99 117 IPR035104 -
Cla05g00723 413 PRINTS Ribosomal protein S1 signature 117 131 IPR035104 -
Cla05g00723 413 PRINTS Ribosomal protein S1 signature 190 206 IPR035104 -
Cla05g00723 413 PRINTS Ribosomal protein S1 signature 208 225 IPR035104 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00723 K02945 RP-S1, rpsA; small subunit ribosomal protein S1 - csv:101222582 780.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00723 Cla06g00406 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00129 Cla-Chr4:3832249 Cla05g00723 Cla-Chr5:6813697 2.69E-06 transposed
Cla06g00877 Cla-Chr6:13468375 Cla05g00723 Cla-Chr5:6813697 2.86E-11 transposed
Cla07g01473 Cla-Chr7:32013709 Cla05g00723 Cla-Chr5:6813697 2.53E-08 transposed
Cla08g00263 Cla-Chr8:5477473 Cla05g00723 Cla-Chr5:6813697 0 transposed
Cla08g00740 Cla-Chr8:19681193 Cla05g00723 Cla-Chr5:6813697 2.00E-28 transposed
Cla10g01335 Cla-Chr10:28319288 Cla05g00723 Cla-Chr5:6813697 2.23E-08 transposed
Cla05g00723 Cla-Chr5:6813697 Cla06g00406 Cla-Chr6:4964563 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002885 2 7 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 2 1 2 1 1 2 1 2 2 1 5 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00723 Cla_Chr05 FPKM 9.349206 9.74071 0.0 0.0 0.0 0.0 0.0 39.350521 50.270298 48.680244