Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00724 ATGGGGGAAGCGAAAGGCGTGGTGAAGCACATTTTGCTGGCGAAATTCAAAGATGGAATCACAGAGGAACAGATCGACCAACTCATCAAGGGATATGCCAATCTCGTCAATCTCATTGAACCTATGAAGGCTTTCCAGTGTGGCAAGGATGTTAGCATTGAAAATCTACACCAAGGTTTCACTCACGTCTTTGAATCCACCTTTGAGAGTACGCAGGGCATAGCAGAGTATATATCTCACCCTGCACATGTGGAGTATGCAAACTTGTTCCTTTCTTCCTTGGACAAAGTTATTGTTATTGACTACAAACCGACGTTAATTTACAGCTAA 330 43.03 MGEAKGVVKHILLAKFKDGITEEQIDQLIKGYANLVNLIEPMKAFQCGKDVSIENLHQGFTHVFESTFESTQGIAEYISHPAHVEYANLFLSSLDKVIVIDYKPTLIYS 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6822471 6826651 - ClCG05G006740.1 Cla05g00724 272214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00724 109 Pfam Stress responsive A/B Barrel Domain 8 103 IPR013097 -
Cla05g00724 109 PANTHER - 3 105 IPR044662 -
Cla05g00724 109 SUPERFAMILY Dimeric alpha+beta barrel 8 105 IPR011008 -
Cla05g00724 109 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN HS1 3 105 - -
Cla05g00724 109 Gene3D - 1 108 - -
Cla05g00724 109 SMART Dabb_2 8 104 IPR013097 -
Cla05g00724 109 ProSiteProfiles Stress-response A/B barrel domain profile. 8 102 IPR013097 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00724 - - - csv:101202790 206.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02134 Cla-Chr2:36407683 Cla05g00724 Cla-Chr5:6822471 2.65E-22 dispersed
Cla05g00724 Cla-Chr5:6822471 Cla11g00138 Cla-Chr11:1704818 6.54E-08 dispersed
Cla05g00718 Cla-Chr5:6738904 Cla05g00724 Cla-Chr5:6822471 2.36E-51 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g23 . . . . . . . . . . . Cma14g01573 . Car14g01386 Sed02g1121 . Cpe03g01314 Bhi01g01109 Tan10g1095 Cmetu06g2217 . Hepe05g1358 . Lcy11g1320 . . . . . . . . . . . . . . . . Blo07g00129 Bda11g00490 . . . . Bma06g01454 . . Cmo14g01606 . . . . . . . . . . . . . Cla05g00724 Cam05g0794 Cec05g0799 Cco05g0797 Clacu05g0783 . Cre05g0823 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003452 1 2 1 1 1 3 1 2 3 1 3 3 1 1 1 1 2 0 1 2 1 1 1 1 1 2 1 2 1 5 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00724 Cla_Chr05 FPKM 34.907284 37.32061 31.637827 32.934834 17.680077 17.138449 18.084129 27.846472 24.363764 26.806417