Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00729 ATGGCTCTCGACGCCGAAGCTGCACCAGCGGCGGAGTTGGCGCTTGCTGATACCGACATCAACTGGAACAGGCGATGTGTGGAGTTCATCTCCACTTTACTTCTAAGCTTTAACGTCCTCGCCTTCAATAATCTCCTCCGGTTGGACAAGACAAAGTTTCATATAATTGGGGCAATACTCTTTACGGCTCAGTCAGCCTTGTTACATCCAACAGCGGTTGTAAAAACTAGAATGCAAGTTGCTGGGTCTGGTCTATCTCACATACGTGGACTGTCAGTTTTCTGGAATATATTGAAGTCTGATGGAATCTCTGGCTTGTATAGAGGTTTTGGTACTTCAGCGATTGGATCATTACCTGGTAGAGTATTGGCTTTAACATCACTAGAAGTATCAAAAGACATGATGTTGAAATATACTGGAAATTTGGAGATGTATGAAGCAACACGTGTTGGTCTTGCTAATGGAGTGGCAGGCATGATCTCGAATTTAGTTTCATGCATATACTATGTGCCATTGGACGTGACTTGCCAGAGACTGATGGTTCAAGGGCTTCCTGGAACCACCTTCTGCAATGGCCCACTTGATGTTGTCAGAAAAGTGATGAAGGCTGAAGGATTTCGTGGTTTATATAGGGGTTTTGGATTAACGGCTGTAACTCAGTCCCCAGCATCTGCTCTCTGGTGGGGTGTTTATGGTGCTGCTCAGCATATTATCTGGAGGAGCTTAGGATATCAAGATAGCATGGAGAAGAAACCTTCTCACATGGAGATGGTGACGGTTCAGGCCACAGCAGGAATGGTGGCAGGTGCTTGTTCCTCTGTTATTACAACTCCCGTAGACACAGTAAAGACGCGACTTCAGGTCATCGATAACTATGGAATTGGAAGACCATCCGTGCTCAAGACTTCAAGAGCACTTCTCAAGGAAGATGGATGGTTGGGATTTTATAGAGGCTTTGGACCTCGGTTTTTGAATATGTCACTTTATGGAACCACGATGATAGTCACTTATGAACTGATCAGTGATTTCACTCCAGTTTGTACCACAGAGCTAGGAATGATGGCTGCTCAAGCAGAGGAGTTCAGTAGACGTGGTGTAAAGCTTATAGGATTATCTTGCGATGATGTTCAATCTCACACCGAATGGATCAAAGATATCGAAGCCTACAATAAAGGAAAAAAAGTCACATATCCAATACTGGCGGATCCAAAGCGGGAGATCATTAAGGAACTGAACATGGTTGACCCTGACGAGAAAGACCCGTCGGGTGGTGCAGTGCCATCGCGAGCATTGCACATCATCGGTCCGGACAAGAAGGTGAAGCTGAGCTTCTTATACCCAGCAAGTACTGGTAGGAACATGGAGGAAGTGGTGAGGGTTTTGGAGTCTTTGCAGAAGGCTGCAAAGCACAAGGTGGCGACTCCGGTGAACTGGAAGCCGGGCGACAAGTGCGTGATTGCGCCGAGTGTGAGTAATGAGGAAGCCAAGCAAATGTTCACTGGAGGCTTTGAAACTGTGGAGCTTCCATCAAAGAAGGAATACCTGCGTTTCACTGCTGTGTGA 1563 46.26 MALDAEAAPAAELALADTDINWNRRCVEFISTLLLSFNVLAFNNLLRLDKTKFHIIGAILFTAQSALLHPTAVVKTRMQVAGSGLSHIRGLSVFWNILKSDGISGLYRGFGTSAIGSLPGRVLALTSLEVSKDMMLKYTGNLEMYEATRVGLANGVAGMISNLVSCIYYVPLDVTCQRLMVQGLPGTTFCNGPLDVVRKVMKAEGFRGLYRGFGLTAVTQSPASALWWGVYGAAQHIIWRSLGYQDSMEKKPSHMEMVTVQATAGMVAGACSSVITTPVDTVKTRLQVIDNYGIGRPSVLKTSRALLKEDGWLGFYRGFGPRFLNMSLYGTTMIVTYELISDFTPVCTTELGMMAAQAEEFSRRGVKLIGLSCDDVQSHTEWIKDIEAYNKGKKVTYPILADPKREIIKELNMVDPDEKDPSGGAVPSRALHIIGPDKKVKLSFLYPASTGRNMEEVVRVLESLQKAAKHKVATPVNWKPGDKCVIAPSVSNEEAKQMFTGGFETVELPSKKEYLRFTAV 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6913770 6920155 + ClCG05G006790.2 Cla05g00729 272219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00729 520 Pfam C-terminal domain of 1-Cys peroxiredoxin 463 501 IPR019479 GO:0051920
Cla05g00729 520 Gene3D Glutaredoxin 302 452 - -
Cla05g00729 520 SUPERFAMILY Mitochondrial carrier 49 339 IPR023395 -
Cla05g00729 520 ProSiteProfiles Solute carrier (Solcar) repeat profile. 49 134 IPR018108 -
Cla05g00729 520 Gene3D Antioxidant, Horf6; Chain A, domain2 453 520 - -
Cla05g00729 520 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 44 343 - -
Cla05g00729 520 Pfam AhpC/TSA family 341 441 IPR000866 GO:0016209|GO:0016491
Cla05g00729 520 ProSiteProfiles Solute carrier (Solcar) repeat profile. 149 237 IPR018108 -
Cla05g00729 520 SUPERFAMILY Thioredoxin-like 341 518 IPR036249 -
Cla05g00729 520 Pfam Mitochondrial carrier protein 55 138 IPR018108 -
Cla05g00729 520 Pfam Mitochondrial carrier protein 153 239 IPR018108 -
Cla05g00729 520 Pfam Mitochondrial carrier protein 260 343 IPR018108 -
Cla05g00729 520 PANTHER OS01G0329400 PROTEIN 44 343 - -
Cla05g00729 520 ProSiteProfiles Solute carrier (Solcar) repeat profile. 256 343 IPR018108 -
Cla05g00729 520 ProSiteProfiles Thioredoxin domain profile. 292 466 IPR013766 -
Cla05g00729 520 Gene3D Mitochondrial carrier domain 40 236 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00729 Cla-Chr5:6913770 Cla11g00459 Cla-Chr11:5202512 7.12E-92 dispersed
Cla10g01760 Cla-Chr10:33519629 Cla05g00729 Cla-Chr5:6913770 1.61E-13 dispersed
Cla05g00729 Cla-Chr5:6913770 Cla05g01857 Cla-Chr5:30443758 6.78E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00729 K15121 - csv:101213375 583.948