Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00742 ATGATGCCACACCTTGAACATCAACAACACATCAAATATTATGGTGGATACAACTTAAGTTCTCTATCTTTGGAGATAGAAGAAGAAGGAAGTGAGAGAGGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCCGCCGACATCCGTACCGGCCGTCGTTACGCCGTCAAGATCCTTGATAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGAGAATCGAACTGATGCAATCGATATCGGAATCGGAATTGATTGCATCCGAATGTTGTAAGACTTTACGAGGTTTGTATTCGAATCACCGTGATTCTGATGGATTTAATGAAGAAACGACTGTTTTAGCTAGTAAGACGAAGATTTATATGGTTTTGGAGTGCGCCTCTGGTGGAGAATTGTTTGATAGAATTGAATCGAAGGGTAAAATGGATGAAGTTGAAGGTCGGAGGCTCTTCCAGCAGCTTATTGATGGTCTTAGCTACTGCCATGACAAAGGAGTTTACCACAGGGATCTCAAGTTGGAAAACGTGCTTGTTGATGCTAAGGGAAATATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACAACCTGTGGAAGTCCCAACTATGTTGCACCAGAGGTTCTTGCTAATAGAGGATACAATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTTTCTTCCTTTTGACGAGACCAATCTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAGGAGAACTCTTGACCCCAATCCCAATACTCGGATTACCATGGCAGGAATTAAAGAGAATGAGTGGTTCAAGACTGACTACCATCCTGCTTCTCCTGGTTATGACGACGATGATGAGGAGGGTTCACTTACTGATCAGGATGATGCCATCTCAACGCCTGATGAGCCATCTGACGTTGAAAACAGCCCAGAATCTCCTTCTATTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTTTGGATTTGTCTGGCTTCTTTGAGCAAGAGGATGTCTCCGAGAGGAAGATCAGATTTACATCCAACCATTCTGCCAAAGACTTGCTTGAGAGAATCGAGGTTATCGCAACGGATATGGGATTTCGAGTTCAAAAGAAAAGTGGAAAGTTGAAATTGATTCAAGAGATAAGAAGTCAAAAAAGCCTAAGTAATCTATCATTTGTAGCCGAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTTGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTATAGACAGTTGTGTGAAAGGCTGTCAAATGATTTGGGCACAAACCCAGAGCTGGAACGGCAAAATTCAAGCTCATTCGCATTAAACACTACATGCTAG 1524 42.19 MMPHLEHQQHIKYYGGYNLSSLSLEIEEEGSERGRRRRRRRRRRRRMRVGKYELGKTLGEGNFGKVKLAADIRTGRRYAVKILDKTKILHLNFSDQRIELMQSISESELIASECCKTLRGLYSNHRDSDGFNEETTVLASKTKIYMVLECASGGELFDRIESKGKMDEVEGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTAFLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKENEWFKTDYHPASPGYDDDDEEGSLTDQDDAISTPDEPSDVENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNHSAKDLLERIEVIATDMGFRVQKKSGKLKLIQEIRSQKSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERLSNDLGTNPELERQNSSSFALNTTC 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7021191 7025655 + ClCG05G006920.1 Cla05g00742 272232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00742 507 PANTHER CBL-INTERACTING PROTEIN KINASE 21 41 493 - -
Cla05g00742 507 MobiDBLite consensus disorder prediction 331 367 - -
Cla05g00742 507 Gene3D Kinase associated domain 1, KA1 370 489 - -
Cla05g00742 507 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
Cla05g00742 507 Gene3D Transferase(Phosphotransferase) domain 1 43 369 - -
Cla05g00742 507 ProSiteProfiles NAF domain profile. 367 391 IPR018451 GO:0007165
Cla05g00742 507 MobiDBLite consensus disorder prediction 349 367 - -
Cla05g00742 507 SUPERFAMILY Protein kinase-like (PK-like) 49 327 IPR011009 -
Cla05g00742 507 CDD CIPK_C 373 484 - -
Cla05g00742 507 Pfam Protein kinase domain 52 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00742 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Cla05g00742 507 PANTHER - 41 493 - -
Cla05g00742 507 Pfam NAF domain 369 428 IPR004041 GO:0007165
Cla05g00742 507 SMART serkin_6 52 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00742 507 ProSiteProfiles Protein kinase domain profile. 52 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00742 Cla-Chr5:7021191 Cla03g00613 Cla-Chr3:7315854 3.72E-139 dispersed
Cla06g00392 Cla-Chr6:4820053 Cla05g00742 Cla-Chr5:7021191 1.20E-28 dispersed
Cla05g00742 Cla-Chr5:7021191 Cla06g00391 Cla-Chr6:4802415 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80547 PF00069 Pkinase 1.90E-58 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00742 K07198 - csv:101205987 795.038