Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00770 ATGGAGAAGGAATTCTTCATGAACGATGCTGGATGCAGTTTTTATGGAATGGAAATCCAACCTAATGAGCTGAATTCAAGTGGGTTGTTTAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACGTTATTGGCGGCGGCGGTGGCGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCGTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCATCAAAACCTTGCCCCATTTTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGCCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGATCAATTGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTGTCAAGTAACAAATCCTTCAACATTGGTGGAATTGGATCTCAAACGGGGGTTCAAGAAGGCGAGCAGCAAAGCCCAGTTCAAAAGGTGAATTCAATGCCAATCCCTAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGTGATTCGCGAGAGGGATCTTCGGTTTCCGAGCAGATTACAATTGGGGAATTGGGTTTGAAAGGTAAAGCTGAAACCAACACTAGAAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAGAAAGAGATTGATGCTGCAAAAGGGAAGTCAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATCCAAATCAGAAACAAAACAATGATAATTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGTCACAGTTTGGCTGAAAGAGTTCGACGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAGGATCTCGTCCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTCGAGTTTCTTTCAATGAAATTGGCAACTGTGAATCCAAGGATGGATTTTAACATGGAGACCCTTGTACCAAAGGATATCTTCAAAGGTCCCGGTTCTTCACCGCATACGGGTTACCCTATGGATTCATCTGTGCCCCAATTTGCATATGATTATCAATCTATGCACATGCCACCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAACAATTCTCAGTTGCCTCAGCAAGTGGTGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGCGGATACAACGAAGTCGTGAACGGAATCCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGGTAAGCTAAACCACAGAATTTGTTGGCAGCAGTTAAAAGCTCTTAACTACTTCCCAAACTAA 1683 42.9 MEKEFFMNDAGCSFYGMEIQPNELNSSGLFNPNWENSMDQSDLFESTLSSIVSSPANSHVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSIAGAGVESGKLSRVSSNKSFNIGGIGSQTGVQEGEQQSPVQKVNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQITIGELGLKGKAETNTRKRKSVQTGQAKDVKAAVENHESNGKKIKPDEVTKKEIDAAKGKSEAKDGTKASGDPNQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSPHTGYPMDSSVPQFAYDYQSMHMPPLHSSISNGTEKQFSVASASGVMQRNLSGQMPSGYNEVVNGIQISKFWEDELHTVVQMGYGQNQLQNANGKLNHRICWQQLKALNYFPN 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7352450 7356357 - ClCG05G007120.2 Cla05g00770 272260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00770 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 410 IPR011598 GO:0046983
Cla05g00770 560 Pfam Helix-loop-helix DNA-binding domain 364 411 IPR011598 GO:0046983
Cla05g00770 560 MobiDBLite consensus disorder prediction 330 344 - -
Cla05g00770 560 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 35 543 - -
Cla05g00770 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 430 IPR036638 GO:0046983
Cla05g00770 560 Gene3D - 357 431 IPR036638 GO:0046983
Cla05g00770 560 MobiDBLite consensus disorder prediction 206 227 - -
Cla05g00770 560 MobiDBLite consensus disorder prediction 271 329 - -
Cla05g00770 560 SMART finulus 366 416 IPR011598 GO:0046983
Cla05g00770 560 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 35 543 IPR024097 GO:0006355
Cla05g00770 560 MobiDBLite consensus disorder prediction 236 262 - -
Cla05g00770 560 MobiDBLite consensus disorder prediction 206 351 - -
Cla05g00770 560 CDD bHLH_AtBPE_like 350 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00770 Cla-Chr5:7352450 Cla09g00792 Cla-Chr9:8020731 8.18E-88 dispersed
Cla06g01622 Cla-Chr6:29735789 Cla05g00770 Cla-Chr5:7352450 3.34E-40 dispersed
Cla08g00517 Cla-Chr8:15720437 Cla05g00770 Cla-Chr5:7352450 4.65E-38 dispersed
Cla09g00695 Cla-Chr9:6741355 Cla05g00770 Cla-Chr5:7352450 4.33E-22 dispersed
Cla05g00770 Cla-Chr5:7352450 Cla02g00509 Cla-Chr2:5100515 1.51E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61043 PF00010 HLH 1.20E-05 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00770 - - csv:101211278 960.674