Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00770 | ATGGAGAAGGAATTCTTCATGAACGATGCTGGATGCAGTTTTTATGGAATGGAAATCCAACCTAATGAGCTGAATTCAAGTGGGTTGTTTAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACGTTATTGGCGGCGGCGGTGGCGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCGTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCATCAAAACCTTGCCCCATTTTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGCCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGATCAATTGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTGTCAAGTAACAAATCCTTCAACATTGGTGGAATTGGATCTCAAACGGGGGTTCAAGAAGGCGAGCAGCAAAGCCCAGTTCAAAAGGTGAATTCAATGCCAATCCCTAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGTGATTCGCGAGAGGGATCTTCGGTTTCCGAGCAGATTACAATTGGGGAATTGGGTTTGAAAGGTAAAGCTGAAACCAACACTAGAAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAGAAAGAGATTGATGCTGCAAAAGGGAAGTCAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATCCAAATCAGAAACAAAACAATGATAATTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGTCACAGTTTGGCTGAAAGAGTTCGACGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAGGATCTCGTCCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTCGAGTTTCTTTCAATGAAATTGGCAACTGTGAATCCAAGGATGGATTTTAACATGGAGACCCTTGTACCAAAGGATATCTTCAAAGGTCCCGGTTCTTCACCGCATACGGGTTACCCTATGGATTCATCTGTGCCCCAATTTGCATATGATTATCAATCTATGCACATGCCACCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAACAATTCTCAGTTGCCTCAGCAAGTGGTGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGCGGATACAACGAAGTCGTGAACGGAATCCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGGTAAGCTAAACCACAGAATTTGTTGGCAGCAGTTAAAAGCTCTTAACTACTTCCCAAACTAA | 1683 | 42.9 | MEKEFFMNDAGCSFYGMEIQPNELNSSGLFNPNWENSMDQSDLFESTLSSIVSSPANSHVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSIAGAGVESGKLSRVSSNKSFNIGGIGSQTGVQEGEQQSPVQKVNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQITIGELGLKGKAETNTRKRKSVQTGQAKDVKAAVENHESNGKKIKPDEVTKKEIDAAKGKSEAKDGTKASGDPNQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSPHTGYPMDSSVPQFAYDYQSMHMPPLHSSISNGTEKQFSVASASGVMQRNLSGQMPSGYNEVVNGIQISKFWEDELHTVVQMGYGQNQLQNANGKLNHRICWQQLKALNYFPN | 560 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7352450 | 7356357 | - | ClCG05G007120.2 | Cla05g00770 | 272260 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00770 | 560 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 360 | 410 | IPR011598 | GO:0046983 | |
Cla05g00770 | 560 | Pfam | Helix-loop-helix DNA-binding domain | 364 | 411 | IPR011598 | GO:0046983 | |
Cla05g00770 | 560 | MobiDBLite | consensus disorder prediction | 330 | 344 | - | - | |
Cla05g00770 | 560 | PANTHER | TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 | 35 | 543 | - | - | |
Cla05g00770 | 560 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 358 | 430 | IPR036638 | GO:0046983 | |
Cla05g00770 | 560 | Gene3D | - | 357 | 431 | IPR036638 | GO:0046983 | |
Cla05g00770 | 560 | MobiDBLite | consensus disorder prediction | 206 | 227 | - | - | |
Cla05g00770 | 560 | MobiDBLite | consensus disorder prediction | 271 | 329 | - | - | |
Cla05g00770 | 560 | SMART | finulus | 366 | 416 | IPR011598 | GO:0046983 | |
Cla05g00770 | 560 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 35 | 543 | IPR024097 | GO:0006355 | |
Cla05g00770 | 560 | MobiDBLite | consensus disorder prediction | 236 | 262 | - | - | |
Cla05g00770 | 560 | MobiDBLite | consensus disorder prediction | 206 | 351 | - | - | |
Cla05g00770 | 560 | CDD | bHLH_AtBPE_like | 350 | 435 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00770 | Cla-Chr5:7352450 | Cla09g00792 | Cla-Chr9:8020731 | 8.18E-88 | dispersed | |
Cla06g01622 | Cla-Chr6:29735789 | Cla05g00770 | Cla-Chr5:7352450 | 3.34E-40 | dispersed | |
Cla08g00517 | Cla-Chr8:15720437 | Cla05g00770 | Cla-Chr5:7352450 | 4.65E-38 | dispersed | |
Cla09g00695 | Cla-Chr9:6741355 | Cla05g00770 | Cla-Chr5:7352450 | 4.33E-22 | dispersed | |
Cla05g00770 | Cla-Chr5:7352450 | Cla02g00509 | Cla-Chr2:5100515 | 1.51E-49 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61043 | PF00010 | HLH | 1.20E-05 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00770 | - | - | csv:101211278 | 960.674 |