Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00774 | ATGGAGAAGGACAAACCCCAAGGCTATTCTGGTGGATTTCCAACACCATCAAGTCGTTACTCAGTTCTTTCACCAACTGGAAGCATTTTCAATGGAAAATCTGAGGCAACTTCATCTTCAATGTTGCTTCCTCCGATGCCTTCAGGTGCTCTTTCTGATTCAGGTCAATTTGGTCGTGAAAGGCCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCAAATGCCTGATAACCCACCGAGAAATATTGGTCACAGACGTGCCCATTCAGAAATCCTGACCCTTCCTGATGATATTTGTTTTGACAATGACCTTGGTGTCATTGGTAGTGCTGATGGCCCTTCTTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGACAAATTCAATTCTTCGACTGCCACCTCCGCAATACAAGTTGGCGAGTCATCTTCTGCTGTTGGAGATGCAATATCAACTCCTACTCCAGCAATTGGAGCAGCAACCTCTAAAGATGATACTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGCCTCTGCAGCCGATTCCAAGAAAGCCATGTCAGCTACAAAGCTCGCTGAGCTTGCGCTTATTGACCCCAAACGTGCTAAGAGGATATGGGCAAATAGACAGTCGGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTTCTGCTGAGAACAATGAATTAAAGCTGCGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTATTGACTGGCCAAGCAATCCCAAATGGTGGATCAGTTACAAACTTTGCTTCCTTTGGAGCTGGCCAACCATTTTACCCAAATAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAACAACTTCAAATCCACTCCCAGCAGCAGCAGCAACAACAACAACAACATTACCAGTACCATCAGCTGCATCAGCTTCATCAACAGCCAACTGGAGACAACAAATCGAAAGGATCGACTTCTTCTCCGAGTCCAAAAGACAACACATCAGATACGTCCTCTCCCACTTGTTGA | 1260 | 45.16 | MEKDKPQGYSGGFPTPSSRYSVLSPTGSIFNGKSEATSSSMLLPPMPSGALSDSGQFGRERPTDSNRFSHDISQMPDNPPRNIGHRRAHSEILTLPDDICFDNDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAVGDAISTPTPAIGAATSKDDTAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEASAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENNELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAIPNGGSVTNFASFGAGQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQHYQYHQLHQLHQQPTGDNKSKGSTSSPSPKDNTSDTSSPTC | 419 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7417293 | 7420961 | - | ClCG05G007170.2 | Cla05g00774 | 272264 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00774 | 419 | MobiDBLite | consensus disorder prediction | 58 | 76 | - | - | |
Cla05g00774 | 419 | CDD | bZIP_plant_RF2 | 232 | 281 | IPR044759 | GO:0003700|GO:0006355 | |
Cla05g00774 | 419 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 8 | 413 | - | - | |
Cla05g00774 | 419 | MobiDBLite | consensus disorder prediction | 388 | 419 | - | - | |
Cla05g00774 | 419 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
Cla05g00774 | 419 | MobiDBLite | consensus disorder prediction | 11 | 45 | - | - | |
Cla05g00774 | 419 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 8 | 413 | - | - | |
Cla05g00774 | 419 | Coils | Coil | 247 | 316 | - | - | |
Cla05g00774 | 419 | Gene3D | - | 230 | 283 | - | - | |
Cla05g00774 | 419 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 229 | 292 | IPR004827 | GO:0003700|GO:0006355 | |
Cla05g00774 | 419 | SUPERFAMILY | Leucine zipper domain | 231 | 282 | IPR046347 | GO:0003700|GO:0006355 | |
Cla05g00774 | 419 | SMART | brlzneu | 227 | 291 | IPR004827 | GO:0003700|GO:0006355 | |
Cla05g00774 | 419 | Pfam | bZIP transcription factor | 231 | 285 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00774 | Cla-Chr5:7417293 | Cla07g00481 | Cla-Chr7:6801918 | 8.70E-54 | dispersed | |
Cla05g00774 | Cla-Chr5:7417293 | Cla05g00777 | Cla-Chr5:7452353 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61044 | PF00170 | bZIP_1 | 1.80E-08 | CL0018 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00774 | - | - | csv:101210291 | 693.345 |