Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00774 ATGGAGAAGGACAAACCCCAAGGCTATTCTGGTGGATTTCCAACACCATCAAGTCGTTACTCAGTTCTTTCACCAACTGGAAGCATTTTCAATGGAAAATCTGAGGCAACTTCATCTTCAATGTTGCTTCCTCCGATGCCTTCAGGTGCTCTTTCTGATTCAGGTCAATTTGGTCGTGAAAGGCCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCAAATGCCTGATAACCCACCGAGAAATATTGGTCACAGACGTGCCCATTCAGAAATCCTGACCCTTCCTGATGATATTTGTTTTGACAATGACCTTGGTGTCATTGGTAGTGCTGATGGCCCTTCTTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGACAAATTCAATTCTTCGACTGCCACCTCCGCAATACAAGTTGGCGAGTCATCTTCTGCTGTTGGAGATGCAATATCAACTCCTACTCCAGCAATTGGAGCAGCAACCTCTAAAGATGATACTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGCCTCTGCAGCCGATTCCAAGAAAGCCATGTCAGCTACAAAGCTCGCTGAGCTTGCGCTTATTGACCCCAAACGTGCTAAGAGGATATGGGCAAATAGACAGTCGGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTTCTGCTGAGAACAATGAATTAAAGCTGCGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTATTGACTGGCCAAGCAATCCCAAATGGTGGATCAGTTACAAACTTTGCTTCCTTTGGAGCTGGCCAACCATTTTACCCAAATAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAACAACTTCAAATCCACTCCCAGCAGCAGCAGCAACAACAACAACAACATTACCAGTACCATCAGCTGCATCAGCTTCATCAACAGCCAACTGGAGACAACAAATCGAAAGGATCGACTTCTTCTCCGAGTCCAAAAGACAACACATCAGATACGTCCTCTCCCACTTGTTGA 1260 45.16 MEKDKPQGYSGGFPTPSSRYSVLSPTGSIFNGKSEATSSSMLLPPMPSGALSDSGQFGRERPTDSNRFSHDISQMPDNPPRNIGHRRAHSEILTLPDDICFDNDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAVGDAISTPTPAIGAATSKDDTAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEASAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENNELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAIPNGGSVTNFASFGAGQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQHYQYHQLHQLHQQPTGDNKSKGSTSSPSPKDNTSDTSSPTC 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7417293 7420961 - ClCG05G007170.2 Cla05g00774 272264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00774 419 MobiDBLite consensus disorder prediction 58 76 - -
Cla05g00774 419 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700|GO:0006355
Cla05g00774 419 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 413 - -
Cla05g00774 419 MobiDBLite consensus disorder prediction 388 419 - -
Cla05g00774 419 MobiDBLite consensus disorder prediction 1 83 - -
Cla05g00774 419 MobiDBLite consensus disorder prediction 11 45 - -
Cla05g00774 419 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 413 - -
Cla05g00774 419 Coils Coil 247 316 - -
Cla05g00774 419 Gene3D - 230 283 - -
Cla05g00774 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700|GO:0006355
Cla05g00774 419 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700|GO:0006355
Cla05g00774 419 SMART brlzneu 227 291 IPR004827 GO:0003700|GO:0006355
Cla05g00774 419 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00774 Cla-Chr5:7417293 Cla07g00481 Cla-Chr7:6801918 8.70E-54 dispersed
Cla05g00774 Cla-Chr5:7417293 Cla05g00777 Cla-Chr5:7452353 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61044 PF00170 bZIP_1 1.80E-08 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00774 - - csv:101210291 693.345