Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00777 ATGGCTCACTTGATTCGTAATGTGCATGAGTTCCGGGGTTTGATTCAATCTGCTTGTTGCTTCGAAAGGAAGAAGAATCTATCATTTTTGAGTTTCTTGCTTTATAAGCGTCTGATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCTTCACCAATCAAGTCGTTACTCGGGGTTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAAGCAACCTCGTCTTCAATGTCATTCCCTCCATTGGCTCCCAGTACTAATTCTGATTGGGCTCAATCTGGCCGTGGAATGTCCACCGATTCCGCTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCACGGCGAAATGTTGGTCATCGGCGTGCCCATTCAGAGATCTTGACCCTCCCAGATGATATTTGTTTCGATAGTGATCTTGGTATTATTGGTGGGGCTGATGGTCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGCGATTCATCTTCCCCTCTTGTAGAAGCAGCAGCAACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCTCTGGGTCTGACGAAGCCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCTTTGATTGACCCCAAACGAGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCGAGGTCAAAGGAAAGAAAGATGCGATACATTGCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCTACTTCTTTGTCCACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAAGTTCACCTGCAAGACGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATTTGAAAGTCTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATTACAAACTTTGCTTCCTTTGGAGCCGGCCAACAATTCTATCCTCCAAACAATCAAGCAATGCATACTTTGTTGACTGCGCAGCAGTTTCAACAACTTCAAATACAATCCCAACAGCAACAGCAACAGCATTTTCAGTACCAACAGCTGCATCAGCTTCAACAACAACAGGCTGGAGACATCAGAATGAAAGGATCCATATCTCCTCAGAGTTTGAAAGACTCTGCATCGGACACAAAGCCGTCTACCACTTGTTGA 1344 44.94 MAHLIRNVHEFRGLIQSACCFERKKNLSFLSFLLYKRLMDKEKPQCHGGGFLHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPSTNSDWAQSGRGMSTDSARFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGAGQQFYPPNNQAMHTLLTAQQFQQLQIQSQQQQQQHFQYQQLHQLQQQQAGDIRMKGSISPQSLKDSASDTKPSTTC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7452353 7459255 - ClCG05G007200.2 Cla05g00777 272267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00777 447 Gene3D - 259 311 - -
Cla05g00777 447 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 258 321 IPR004827 GO:0003700|GO:0006355
Cla05g00777 447 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 45 441 - -
Cla05g00777 447 SUPERFAMILY Leucine zipper domain 260 310 IPR046347 GO:0003700|GO:0006355
Cla05g00777 447 MobiDBLite consensus disorder prediction 72 123 - -
Cla05g00777 447 MobiDBLite consensus disorder prediction 108 123 - -
Cla05g00777 447 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 45 441 - -
Cla05g00777 447 CDD bZIP_plant_RF2 261 310 IPR044759 GO:0003700|GO:0006355
Cla05g00777 447 SMART brlzneu 256 320 IPR004827 GO:0003700|GO:0006355
Cla05g00777 447 Coils Coil 276 345 - -
Cla05g00777 447 MobiDBLite consensus disorder prediction 428 447 - -
Cla05g00777 447 MobiDBLite consensus disorder prediction 72 107 - -
Cla05g00777 447 Pfam bZIP transcription factor 260 308 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00777 Cla-Chr5:7452353 Cla08g00706 Cla-Chr8:19322985 2.71E-52 dispersed
Cla05g00774 Cla-Chr5:7417293 Cla05g00777 Cla-Chr5:7452353 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61045 PF00170 bZIP_1 1.20E-08 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00777 - - csv:101212010 701.434