Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00797 ATGGGTTTCTCAAATTCCAAGAAAATTTTCATTATTTTCCAATTAATTCTCCAATTAACATTCATTCATTCAGCCATAACTCCACAAAGCAGCACAGAATTCATAAAAACCTCATGCAGTTCCGCCACTTACCCTCGTCTCTGTTTTTCCTCTCTTTCTGTCCACGCCAATGCCATTCAAACAAGCCCTCGCCTTTTGGCCACCGCCGCCCTCTCCGTCTCTCTCTCCTCTGTCAAGTCCGCCGCCACTCAAATTCTCAAGCTTTCCCACTCCCACGGCCTCCCCTCCAGAGATGTCGCTGCTCTTAACGATTGTTTGGAAGAATTGAGGGACTCTGTCGATTCCCTCGCCGCCTCCATTTCCGAGATGCCGAAGCTCCGCCGTGGCCGCGATTTTGATCTCGTTATGAGTAATGTTCAGACTTGGGTTAGCGCCGCCCTCACCGATGAAACCACTTGTAGTGACGGGTTTCAGGGGAAGGCGGTGAACGGCGGCGTTAAGGCCGCGGTTAGGGCTAGGATCGTCAACATTGCGCAGTTGACTAGTAATGCTCTGTCGTTGATCAACCGGATTGTCTTTTCCAAGCCTACCTTTAATGGCATCGATTGGTGGTGCAAAAAAACCACATACCCCGAAACTTGCAAATACTTTTTCAACCATGGAAGCAAAGCTATTCCCAAAGACATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAATGCTGAGAGTTACACGAAAGATGTCGGCTCCAAGTGCCGAAACGGGAAGGAAAAGGCAGCTTGGGCTGATTGTTTAAAGCTTTACCAAAACACCATCCTTCAACTCAACCAAACTCTAGATTCCTCTACTAGCTGTACTGATTTCGATATCCAAACCTGGCTTAGTACTGCCTTAACCAACCTCGAAACATGTCGCACCGGGTTCGCCGAGCTTAATGTCTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACAAGGCTAATAAGCAACAGTTTGGCTATTAACAATGCTTCAGGAGGTGTGGTATTGGGGAAGGAAACATATAAAAAGGGTTTTCCAAGTTGGGTTTCAGGTGGTGATAGGAGGTTATTGCAGTCGTCGTCGTCGTCGTCTTCAATAAAGGTGGACATTGTGGTGGCTCAGGACGGGTCCGGTAATTATACGACGGTCGGAGCTGCGGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGTTGATTGGAGATGGAATGAGATTTACTTTCATTACTGGAAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCTCGAGGCATCACATTCCGAAACACCGCAGGTCCTGAAAACCATCAAGCAGTAGCTCTCCGATCAAGCGCGGATCTTTCGGTTTTCTACCGTTGTGCATTCGAAGGATATCAAGACACCCTCTACGTGCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGTACAGTAGATTTCATATTTGGAAATGGTGCAGTTGTTGTACAAAACTGCATGATTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTGACCGCTCAAGGACGCACTGACCCAAATCAAAACACTGGCATTTCAATTCACAATTCACGAGTGATGGCTACAGATGATTTGAAAGCAGTGGAGAGCAGAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTTGATAATTTGGTTGATCCAGTGGGTTGGTTGGAATGGGATGGTGAATTTGCACTTAATACTTTATATTATGGAGAGTATAAGAATATTGGTCCTCGTTCATCCACTACTCAGCGAGTGAATTGGAAAGGCTATCGTGTTATAACCAATGAAACTGAGGCATCAGAGTTTAGTGTCCAAAATTTCATTGCTGGCCAGTCGTGGTTGCCGGATACAGAGGTCCCATTCACTCCTGGACTTTAG 2067 44.94 MGFSNSKKIFIIFQLILQLTFIHSAITPQSSTEFIKTSCSSATYPRLCFSSLSVHANAIQTSPRLLATAALSVSLSSVKSAATQILKLSHSHGLPSRDVAALNDCLEELRDSVDSLAASISEMPKLRRGRDFDLVMSNVQTWVSAALTDETTCSDGFQGKAVNGGVKAAVRARIVNIAQLTSNALSLINRIVFSKPTFNGIDWWCKKTTYPETCKYFFNHGSKAIPKDMTEFKKMVIQFAMERALNAESYTKDVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTSCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTRLISNSLAINNASGGVVLGKETYKKGFPSWVSGGDRRLLQSSSSSSSIKVDIVVAQDGSGNYTTVGAAVEEAGKRKGNGRFVIQVKRGVYEENVEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVARGITFRNTAGPENHQAVALRSSADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNGAVVVQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKAVESRVKTYLGRPWKEYSRTVFMKTYLDNLVDPVGWLEWDGEFALNTLYYGEYKNIGPRSSTTQRVNWKGYRVITNETEASEFSVQNFIAGQSWLPDTEVPFTPGL 688
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 7768370 7778698 - ClCG05G007400.1 Cla05g00797 272287
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00797 688 CDD PMEI-like_3 203 345 - -
Cla05g00797 688 ProSitePatterns Pectinesterase signature 2. 521 530 IPR033131 -
Cla05g00797 688 Gene3D - 377 688 IPR012334 -
Cla05g00797 688 PANTHER PECTINESTERASE 12 192 - -
Cla05g00797 688 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 201 344 IPR035513 -
Cla05g00797 688 PANTHER PECTINESTERASE 196 687 - -
Cla05g00797 688 Pfam Pectinesterase 384 673 IPR000070 GO:0030599|GO:0042545
Cla05g00797 688 CDD PMEI-like_3 37 191 - -
Cla05g00797 688 SMART PMEI_2 30 187 IPR006501 GO:0004857
Cla05g00797 688 SMART PMEI_2 196 342 IPR006501 GO:0004857
Cla05g00797 688 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 190 IPR006501 GO:0004857
Cla05g00797 688 TIGRFAM PME_inhib: pectinesterase inhibitor domain 199 344 IPR006501 GO:0004857
Cla05g00797 688 Gene3D Invertase/pectin methylesterase inhibitor family protein 198 345 IPR035513 -
Cla05g00797 688 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 191 IPR035513 -
Cla05g00797 688 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 191 IPR035513 -
Cla05g00797 688 Pfam Plant invertase/pectin methylesterase inhibitor 34 187 IPR006501 GO:0004857
Cla05g00797 688 Pfam Plant invertase/pectin methylesterase inhibitor 201 342 IPR006501 GO:0004857
Cla05g00797 688 SUPERFAMILY Pectin lyase-like 380 687 IPR011050 -
Cla05g00797 688 PANTHER PECTINESTERASE 12 192 - -
Cla05g00797 688 PANTHER PECTINESTERASE 196 687 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla01g00469 Cla05g00797 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00362 Cla-Chr1:3987277 Cla05g00797 Cla-Chr5:7768370 1.13E-07 dispersed
Cla01g00623 Cla-Chr1:7182132 Cla05g00797 Cla-Chr5:7768370 2.78E-161 dispersed
Cla02g00061 Cla-Chr2:620728 Cla05g00797 Cla-Chr5:7768370 6.05E-97 dispersed
Cla05g00253 Cla-Chr5:2312249 Cla05g00797 Cla-Chr5:7768370 0 dispersed
Cla05g00797 Cla-Chr5:7768370 Cla09g00512 Cla-Chr9:4846710 4.91E-14 dispersed
Cla05g00799 Cla-Chr5:7800288 Cla05g00797 Cla-Chr5:7768370 2.17E-11 dispersed
Cla09g00545 Cla-Chr9:5047271 Cla05g00797 Cla-Chr5:7768370 5.01E-26 dispersed
Cla10g00290 Cla-Chr10:3804164 Cla05g00797 Cla-Chr5:7768370 6.03E-06 dispersed
Cla05g00797 Cla-Chr5:7768370 Cla05g00798 Cla-Chr5:7792588 3.06E-25 tandem
Cla01g00469 Cla-Chr1:5025842 Cla05g00797 Cla-Chr5:7768370 0 transposed
Cla10g00572 Cla-Chr10:8230132 Cla05g00797 Cla-Chr5:7768370 0 transposed
Cla01g00361 Cla-Chr1:3975009 Cla05g00797 Cla-Chr5:7768370 4.73E-08 wgd
Cla05g00252 Cla-Chr5:2297068 Cla05g00797 Cla-Chr5:7768370 3.11E-128 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00797 K01051 - csv:101211449 908.672