Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g00797 | ATGGGTTTCTCAAATTCCAAGAAAATTTTCATTATTTTCCAATTAATTCTCCAATTAACATTCATTCATTCAGCCATAACTCCACAAAGCAGCACAGAATTCATAAAAACCTCATGCAGTTCCGCCACTTACCCTCGTCTCTGTTTTTCCTCTCTTTCTGTCCACGCCAATGCCATTCAAACAAGCCCTCGCCTTTTGGCCACCGCCGCCCTCTCCGTCTCTCTCTCCTCTGTCAAGTCCGCCGCCACTCAAATTCTCAAGCTTTCCCACTCCCACGGCCTCCCCTCCAGAGATGTCGCTGCTCTTAACGATTGTTTGGAAGAATTGAGGGACTCTGTCGATTCCCTCGCCGCCTCCATTTCCGAGATGCCGAAGCTCCGCCGTGGCCGCGATTTTGATCTCGTTATGAGTAATGTTCAGACTTGGGTTAGCGCCGCCCTCACCGATGAAACCACTTGTAGTGACGGGTTTCAGGGGAAGGCGGTGAACGGCGGCGTTAAGGCCGCGGTTAGGGCTAGGATCGTCAACATTGCGCAGTTGACTAGTAATGCTCTGTCGTTGATCAACCGGATTGTCTTTTCCAAGCCTACCTTTAATGGCATCGATTGGTGGTGCAAAAAAACCACATACCCCGAAACTTGCAAATACTTTTTCAACCATGGAAGCAAAGCTATTCCCAAAGACATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAATGCTGAGAGTTACACGAAAGATGTCGGCTCCAAGTGCCGAAACGGGAAGGAAAAGGCAGCTTGGGCTGATTGTTTAAAGCTTTACCAAAACACCATCCTTCAACTCAACCAAACTCTAGATTCCTCTACTAGCTGTACTGATTTCGATATCCAAACCTGGCTTAGTACTGCCTTAACCAACCTCGAAACATGTCGCACCGGGTTCGCCGAGCTTAATGTCTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACAAGGCTAATAAGCAACAGTTTGGCTATTAACAATGCTTCAGGAGGTGTGGTATTGGGGAAGGAAACATATAAAAAGGGTTTTCCAAGTTGGGTTTCAGGTGGTGATAGGAGGTTATTGCAGTCGTCGTCGTCGTCGTCTTCAATAAAGGTGGACATTGTGGTGGCTCAGGACGGGTCCGGTAATTATACGACGGTCGGAGCTGCGGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGTTGATTGGAGATGGAATGAGATTTACTTTCATTACTGGAAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCTCGAGGCATCACATTCCGAAACACCGCAGGTCCTGAAAACCATCAAGCAGTAGCTCTCCGATCAAGCGCGGATCTTTCGGTTTTCTACCGTTGTGCATTCGAAGGATATCAAGACACCCTCTACGTGCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGTACAGTAGATTTCATATTTGGAAATGGTGCAGTTGTTGTACAAAACTGCATGATTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTGACCGCTCAAGGACGCACTGACCCAAATCAAAACACTGGCATTTCAATTCACAATTCACGAGTGATGGCTACAGATGATTTGAAAGCAGTGGAGAGCAGAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTTGATAATTTGGTTGATCCAGTGGGTTGGTTGGAATGGGATGGTGAATTTGCACTTAATACTTTATATTATGGAGAGTATAAGAATATTGGTCCTCGTTCATCCACTACTCAGCGAGTGAATTGGAAAGGCTATCGTGTTATAACCAATGAAACTGAGGCATCAGAGTTTAGTGTCCAAAATTTCATTGCTGGCCAGTCGTGGTTGCCGGATACAGAGGTCCCATTCACTCCTGGACTTTAG | 2067 | 44.94 | MGFSNSKKIFIIFQLILQLTFIHSAITPQSSTEFIKTSCSSATYPRLCFSSLSVHANAIQTSPRLLATAALSVSLSSVKSAATQILKLSHSHGLPSRDVAALNDCLEELRDSVDSLAASISEMPKLRRGRDFDLVMSNVQTWVSAALTDETTCSDGFQGKAVNGGVKAAVRARIVNIAQLTSNALSLINRIVFSKPTFNGIDWWCKKTTYPETCKYFFNHGSKAIPKDMTEFKKMVIQFAMERALNAESYTKDVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTSCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTRLISNSLAINNASGGVVLGKETYKKGFPSWVSGGDRRLLQSSSSSSSIKVDIVVAQDGSGNYTTVGAAVEEAGKRKGNGRFVIQVKRGVYEENVEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVARGITFRNTAGPENHQAVALRSSADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNGAVVVQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKAVESRVKTYLGRPWKEYSRTVFMKTYLDNLVDPVGWLEWDGEFALNTLYYGEYKNIGPRSSTTQRVNWKGYRVITNETEASEFSVQNFIAGQSWLPDTEVPFTPGL | 688 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7768370 | 7778698 | - | ClCG05G007400.1 | Cla05g00797 | 272287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g00797 | 688 | CDD | PMEI-like_3 | 203 | 345 | - | - | |
| Cla05g00797 | 688 | ProSitePatterns | Pectinesterase signature 2. | 521 | 530 | IPR033131 | - | |
| Cla05g00797 | 688 | Gene3D | - | 377 | 688 | IPR012334 | - | |
| Cla05g00797 | 688 | PANTHER | PECTINESTERASE | 12 | 192 | - | - | |
| Cla05g00797 | 688 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 201 | 344 | IPR035513 | - | |
| Cla05g00797 | 688 | PANTHER | PECTINESTERASE | 196 | 687 | - | - | |
| Cla05g00797 | 688 | Pfam | Pectinesterase | 384 | 673 | IPR000070 | GO:0030599|GO:0042545 | |
| Cla05g00797 | 688 | CDD | PMEI-like_3 | 37 | 191 | - | - | |
| Cla05g00797 | 688 | SMART | PMEI_2 | 30 | 187 | IPR006501 | GO:0004857 | |
| Cla05g00797 | 688 | SMART | PMEI_2 | 196 | 342 | IPR006501 | GO:0004857 | |
| Cla05g00797 | 688 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 8 | 190 | IPR006501 | GO:0004857 | |
| Cla05g00797 | 688 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 199 | 344 | IPR006501 | GO:0004857 | |
| Cla05g00797 | 688 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 198 | 345 | IPR035513 | - | |
| Cla05g00797 | 688 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 30 | 191 | IPR035513 | - | |
| Cla05g00797 | 688 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 33 | 191 | IPR035513 | - | |
| Cla05g00797 | 688 | Pfam | Plant invertase/pectin methylesterase inhibitor | 34 | 187 | IPR006501 | GO:0004857 | |
| Cla05g00797 | 688 | Pfam | Plant invertase/pectin methylesterase inhibitor | 201 | 342 | IPR006501 | GO:0004857 | |
| Cla05g00797 | 688 | SUPERFAMILY | Pectin lyase-like | 380 | 687 | IPR011050 | - | |
| Cla05g00797 | 688 | PANTHER | PECTINESTERASE | 12 | 192 | - | - | |
| Cla05g00797 | 688 | PANTHER | PECTINESTERASE | 196 | 687 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla01g00469 | Cla05g00797 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00362 | Cla-Chr1:3987277 | Cla05g00797 | Cla-Chr5:7768370 | 1.13E-07 | dispersed | |
| Cla01g00623 | Cla-Chr1:7182132 | Cla05g00797 | Cla-Chr5:7768370 | 2.78E-161 | dispersed | |
| Cla02g00061 | Cla-Chr2:620728 | Cla05g00797 | Cla-Chr5:7768370 | 6.05E-97 | dispersed | |
| Cla05g00253 | Cla-Chr5:2312249 | Cla05g00797 | Cla-Chr5:7768370 | 0 | dispersed | |
| Cla05g00797 | Cla-Chr5:7768370 | Cla09g00512 | Cla-Chr9:4846710 | 4.91E-14 | dispersed | |
| Cla05g00799 | Cla-Chr5:7800288 | Cla05g00797 | Cla-Chr5:7768370 | 2.17E-11 | dispersed | |
| Cla09g00545 | Cla-Chr9:5047271 | Cla05g00797 | Cla-Chr5:7768370 | 5.01E-26 | dispersed | |
| Cla10g00290 | Cla-Chr10:3804164 | Cla05g00797 | Cla-Chr5:7768370 | 6.03E-06 | dispersed | |
| Cla05g00797 | Cla-Chr5:7768370 | Cla05g00798 | Cla-Chr5:7792588 | 3.06E-25 | tandem | |
| Cla01g00469 | Cla-Chr1:5025842 | Cla05g00797 | Cla-Chr5:7768370 | 0 | transposed | |
| Cla10g00572 | Cla-Chr10:8230132 | Cla05g00797 | Cla-Chr5:7768370 | 0 | transposed | |
| Cla01g00361 | Cla-Chr1:3975009 | Cla05g00797 | Cla-Chr5:7768370 | 4.73E-08 | wgd | |
| Cla05g00252 | Cla-Chr5:2297068 | Cla05g00797 | Cla-Chr5:7768370 | 3.11E-128 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g00797 | K01051 | - | csv:101211449 | 908.672 |