Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g00810 | ATGTCTGCCACTCAAAATGATCCACTTCTGCAAGTGGAAACCACTTGTGGTTCACTTCTTTATGAACTTCAGATAATATGGGATGAAGTTGGTGAGGGTGAAGCTGAAAGAGATAGAATGTTACTTGAGCTTGAACAAGAGTGTTTAGAGGTTTACAGAAGAAAGGTTGATCAAGCAAACCATTCTAGAGCTCATCTGAGGCAGGCGATTGCAGATTCTGAAGCACAACTTGCTGCAATCTGTTCTGCAATGGGAGAACGTCCAGTACATATAAGACAGTCTGATCAAAAGGCTGTTAGCTTGAAAGATGAACTCAAGCAAATTCTTCCACAACTGGATGAAATGCGGAAGCGGAAATCCGAGAGAAGCAATCAATTTCTGGAAGTCCTAGAGGAGATTCAAAAGATTTCAGATGAGTTAAATGGTTATGAACATTCAGCATCAAAGATAATGTTGGATGAAACTGATTTATCATTGAAGAAGCTTGATGAATTGACGAAACAGCTTAATGCACTTCAGCAGGAGAAGAGCGATCGGATGAAGCTGGTTCATAACCACATGCGTACTTTGGAATCACTCTGTTTAGTCCTGGGTATGGATTCCAAGCAGATATCTATTGAAGTTCATCCAACTTTGGGTGATTTTGAAGGACCAACAAATATAACTATCGATACCATGGAGCAGTTGACTGCTATGATTGAAAAGCTGCGAGATATCAAATTACAAAGAATGCAGAAGCTTCAAGATCTTGCAAGTGCAATTTTAGACCTGTGGGATTTAATGGATACTCCAGTTGAAGAACAACAGATGTTTCAAAATATCACTTGCAACATTGCTGCTTCAGAACACGAGATAGTTGAACCTAATGCTCTCTCTGCGGACGTTATAACATATGTTGAAGCAGAAGTCTCCAGATTGGAAGAGTTGAAGTCAAGCAGAATGAAAGAACTTGTTCTGAAGAAGAGATTAGAGCTAGAGGAGATGTGTAGGAAGCTGCATATGGTACCAGCAGAAGATTCTGCTATTGAATATGTGATTGATGCAATAGATAGTGGAGCTTTGGATCCTGCTTGTGTCCTTGAGCAAATTGACAGTCAAATTCTTAAGGTCAAAGAAGAAGCTTTTGACAGGAAGGAAATTCTTGAGAAAGTGGAGAGATGGTTGGGTGCATGTGAAGAGGAGTGCTGGCTTGAGGAGTATAACAGGGATGAAAACCGTTATAATGCGGGAAGAGGAGCTCATCTTACTCTTAAACGTGCTGAAAAGGCTCGGGCATTGGTTAATAAACTTCCAGGAATGGTAAATGCTTTGACTTCAAAAACCATGTCATGGGAGAAAGAAAGAGGCATTGAATTCACCTATGATGGTGTTCGTCTTCTCTCAATGCTCGAGGAGTACACGATTTTAAGACAAGAGAAAGAGCAAGAACTACGCAGGCAGCGGGACCAGAAGAAACTTCAGGGGCAACTAATGGCCGAACAGGAAGCACTTTATGGGTCAAAACCTAGCCCATCAAAGCCTCAGAGTGTGAAAAAAGGTCCTAGAATGTCTACTGGTGGTGCCGGTGCCGGTGCTGGTGCTGGTGCTGGCAGTAGGAGATTTTCCCTTGGAGGTGCATTGCTTCAAACTCCGAAGCCTGATCATAAAGGCCTCCGACCAGGCAGAAAAAGTGACAGAGGACATCAAAACAACCAAACTTTTCACCTTGATGAGGGATTTGTTGAAGCTTTATCAGCTGGTAGGAGAGGCTTGGATGTTACTGGTCTCCCTCTAAAGAAGCAGTCATCAGGTGCCAATGCTGGTGAAGGAGGAGAATCACCAATGGTGATGAGAAAGCCTTTTGTTCCTATTCCTACCTCTAGCACGCTTTTCTCAAACTCGACGAATTCGTTGAATGATCTTGGCGAGAAGCTGCAGAAACCGAACATGTCATCCAAGACTCCTATAAAGACGACTTCAATATCAGAAGAAGATATCAAGACACCAAAGAAAATGCCTATCTCAATGCCATCCACACCTTCCACCGTGTCGGTTCCGATGCAGACAGCCATGACACCGGCTCTTCCACAGCCCGTTGATCTTACTGCTCACATTAGTGAAGATATTTCCGAAGTCATTGAATACTCATTTGAGGAAAGAAGAGCTGGTTTTGTACTTCCCAAACCGCTCCACATCAAGTCAATGATACAATTTCAGTTGAGATCTTTGTCCAAGTGTGAAAAGGGACGGTTGTTTCTGAAAGCTGTAGCCATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACGAATGATGAAGCCCTAGACAGCTTCCAGGTAGCTCCAAGAACAGAAGCCCTAAAATCAACCGGTGAGTCTAAAGTAACGGAGCTCGCGGCAGCTGCTCCACCACCGGGGTTTTCAGCGGCGGCTGATGCACCACCGGCGAGTGTAGCGGTTTCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGATGGGAAGCGGTCACTGACATTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACTGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAATCAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGGGCTATTTGCATTCTTTCTGCAAATGGTACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACGTATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCTACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCGCTTGCGGGTCAAGATGGGCGAGTCGTTGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTAGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAGAAGCCAAAAAAGCCTAGAAACGAGTCCACAACCATTTTCTTTCCTCCCGTCAACACTGTCACTGGTGAAGAAATGAAGATAATGTATCCTGGCGGTAACAAGCCTATTCTCACGACACCGTCCTATCAAGAACAATATAATCCGCCGTCCCCTAGCCCAGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGATCAAGAACCAAAAACACAAAGTCAATCAAACTGTGAGGCTTTAACAAATGAATTTCCACGGTTGCCACTGCCTAGCTAA | 3333 | 44.34 | MSATQNDPLLQVETTCGSLLYELQIIWDEVGEGEAERDRMLLELEQECLEVYRRKVDQANHSRAHLRQAIADSEAQLAAICSAMGERPVHIRQSDQKAVSLKDELKQILPQLDEMRKRKSERSNQFLEVLEEIQKISDELNGYEHSASKIMLDETDLSLKKLDELTKQLNALQQEKSDRMKLVHNHMRTLESLCLVLGMDSKQISIEVHPTLGDFEGPTNITIDTMEQLTAMIEKLRDIKLQRMQKLQDLASAILDLWDLMDTPVEEQQMFQNITCNIAASEHEIVEPNALSADVITYVEAEVSRLEELKSSRMKELVLKKRLELEEMCRKLHMVPAEDSAIEYVIDAIDSGALDPACVLEQIDSQILKVKEEAFDRKEILEKVERWLGACEEECWLEEYNRDENRYNAGRGAHLTLKRAEKARALVNKLPGMVNALTSKTMSWEKERGIEFTYDGVRLLSMLEEYTILRQEKEQELRRQRDQKKLQGQLMAEQEALYGSKPSPSKPQSVKKGPRMSTGGAGAGAGAGAGSRRFSLGGALLQTPKPDHKGLRPGRKSDRGHQNNQTFHLDEGFVEALSAGRRGLDVTGLPLKKQSSGANAGEGGESPMVMRKPFVPIPTSSTLFSNSTNSLNDLGEKLQKPNMSSKTPIKTTSISEEDIKTPKKMPISMPSTPSTVSVPMQTAMTPALPQPVDLTAHISEDISEVIEYSFEERRAGFVLPKPLHIKSMIQFQLRSLSKCEKGRLFLKAVAMEEKETGVSRFTVTNDEALDSFQVAPRTEALKSTGESKVTELAAAAPPPGFSAAADAPPASVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIIKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPVNTVTGEEMKIMYPGGNKPILTTPSYQEQYNPPSPSPVTGFKISSTDNLPLSDQEPKTQSQSNCEALTNEFPRLPLPS | 1110 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7912041 | 7922043 | - | ClCG05G007480.2 | Cla05g00810 | 272300 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g00810 | 1110 | Coils | Coil | 463 | 483 | - | - | |
| Cla05g00810 | 1110 | PANTHER | 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 3 | 5 | 637 | - | - | |
| Cla05g00810 | 1110 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 892 | 1014 | - | - | |
| Cla05g00810 | 1110 | PANTHER | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED | 5 | 637 | IPR007145 | GO:0000226|GO:0008017 | |
| Cla05g00810 | 1110 | CDD | DUF296 | 894 | 1008 | IPR005175 | - | |
| Cla05g00810 | 1110 | MobiDBLite | consensus disorder prediction | 635 | 655 | - | - | |
| Cla05g00810 | 1110 | Gene3D | - | 895 | 1024 | - | - | |
| Cla05g00810 | 1110 | ProSiteProfiles | PPC domain profile profile. | 890 | 1033 | IPR005175 | - | |
| Cla05g00810 | 1110 | Coils | Coil | 155 | 182 | - | - | |
| Cla05g00810 | 1110 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 895 | 1008 | IPR005175 | - | |
| Cla05g00810 | 1110 | MobiDBLite | consensus disorder prediction | 587 | 609 | - | - | |
| Cla05g00810 | 1110 | Pfam | Microtubule associated protein (MAP65/ASE1 family) | 18 | 508 | - | - | |
| Cla05g00810 | 1110 | Gene3D | - | 367 | 500 | - | - | |
| Cla05g00810 | 1110 | Coils | Coil | 49 | 76 | - | - | |
| Cla05g00810 | 1110 | MobiDBLite | consensus disorder prediction | 1052 | 1100 | - | - | |
| Cla05g00810 | 1110 | MobiDBLite | consensus disorder prediction | 494 | 566 | - | - | |
| Cla05g00810 | 1110 | MobiDBLite | consensus disorder prediction | 548 | 565 | - | - | |
| Cla05g00810 | 1110 | MobiDBLite | consensus disorder prediction | 800 | 835 | - | - | |
| Cla05g00810 | 1110 | MobiDBLite | consensus disorder prediction | 1052 | 1110 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00810 | Cla-Chr5:7912041 | Cla11g00044 | Cla-Chr11:568389 | 4.74E-65 | dispersed | |
| Cla06g00354 | Cla-Chr6:4478870 | Cla05g00810 | Cla-Chr5:7912041 | 8.25E-55 | dispersed | |
| Cla01g00501 | Cla-Chr1:5399596 | Cla05g00810 | Cla-Chr5:7912041 | 0 | transposed | |
| Cla01g00662 | Cla-Chr1:7826148 | Cla05g00810 | Cla-Chr5:7912041 | 6.12E-139 | transposed | |
| Cla04g00956 | Cla-Chr4:24653872 | Cla05g00810 | Cla-Chr5:7912041 | 5.28E-16 | transposed | |
| Cla08g01011 | Cla-Chr8:22836201 | Cla05g00810 | Cla-Chr5:7912041 | 1.83E-118 | transposed | |
| Cla10g00472 | Cla-Chr10:6242811 | Cla05g00810 | Cla-Chr5:7912041 | 7.04E-153 | transposed | |
| Cla11g01283 | Cla-Chr11:26354656 | Cla05g00810 | Cla-Chr5:7912041 | 1.59E-126 | transposed | |
| Cla01g00342 | Cla-Chr1:3726056 | Cla05g00810 | Cla-Chr5:7912041 | 1.15E-82 | wgd | |
| Cla05g00236 | Cla-Chr5:2141901 | Cla05g00810 | Cla-Chr5:7912041 | 3.37E-88 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g00810 | K16732 | - | csv:101208337 | 1189.87 |