Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00826 ATGAAGGAAAACAGCGACACGTTTTCTTCTCAGCGAAATTCCGCACACCATTCCATTGCTTGGTTCATATTATACTTCGTAGATGATGATTGTCCTCAGCCAGAGATACTCCACGGCGAGTTCCTGCTTCGGACGATTCCGATGACGGAGGTTTACACTAGAATGCCAAGCGAAGATGATGAAGATTCGCCGGCCAAATGTCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGACGGTTAGCAACAGTATCGTCGGGGAATCCCTCGCCCTCCACCACTCCTCACCACCGGAAAGAGAATCAAACTGGTACCTCCGGTTTTGAGAAGAAGCGTGGTCGGAAGACGGACGGCGACGGTAATCCGGAGATTTCATCGTCTTCGTCATCGGGGGAGGAAGTGAAGACTGTAAGAGCTTCACCATCTGTACCTCAGCCGGTTTTCGGGATGATGTCGGTGTCCGGGAGGTCACGTGAGATGGAGGATGCAGTATCGGTGAGCACGTGCGTTTTAGGTTCAGAAAATTTCCGACGGCAACTCGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCGCTTTGTAGGGAGAAGATGCACGTGTTCGTACAGGAGGAATTTTCGCGCGTGATGTGCACGCGCGAGGAAGGTGAGAGTGGCGGCGGTGGAAGCAGCGCGGGAGAGGAGGAGGAGGCGACTTGGAGAAGAGTGATGCAGCGGAGCTTTGAAAGAATGGACGAAATGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGGGTGCCATCCGATGGAGGTGGCTCTCGGCGGCTCCACCGCTGTCGTCGCCGTGCTCACGCCGGATCACATAATCGTCGCCAACTGCGGCGATTCACGCGCTGTCCTTTGCCGAGGAGGAAGGGCCATTCCGCTTTCTAATGATCACAAGCCTGATAGAAATGATGAACTAGCAAGGATTGAAGCAGCTGGAGGACGGGTGATTTTTGTAAATGGAGCTCGGGTTGAAGGAATCCTTGCAATGTCCCGGGCAATAGGACTTTTTGGATTAGAGCTCTGCTCTACCCTTTTACAGTTAACTGACAACGGTTATTTTTCCATATGGATGATGCTTTGGACAGGAGACAAGTATCTCAAGTCAGTTGTAATATCAGAGCCTGAAATTACATTTACTAAAAGAGAATCAGATGATGAATGTTTAATACTTGCAAGTGATGGTCTGTGGGATGTTCTTTCAAGTGAATTGGCTTGTGAGGTAGCTCGTGAATGTCTCCAAGAAGGAGCAGCGGCTGCTGCTACTACAATAGACCTCAATGCCACACCTCAAATTGAAGAAGAAGGGGCTGGAACTTCATATCCCTCTCGGAGTGCATTGGCTGCTGCATTGCTTACTCGTCTTGCTTTAGGGCGGAAAAGCACGGACAACATCAGTGTCATAGTTATTGATCTGAAGAGGAGCTGA 1476 51.15 MKENSDTFSSQRNSAHHSIAWFILYFVDDDCPQPEILHGEFLLRTIPMTEVYTRMPSEDDEDSPAKCRERRRRRIEMRRLATVSSGNPSPSTTPHHRKENQTGTSGFEKKRGRKTDGDGNPEISSSSSSGEEVKTVRASPSVPQPVFGMMSVSGRSREMEDAVSVSTCVLGSENFRRQLVHFFAVYDGHGGPHVAALCREKMHVFVQEEFSRVMCTREEGESGGGGSSAGEEEEATWRRVMQRSFERMDEMALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGRAIPLSNDHKPDRNDELARIEAAGGRVIFVNGARVEGILAMSRAIGLFGLELCSTLLQLTDNGYFSIWMMLWTGDKYLKSVVISEPEITFTKRESDDECLILASDGLWDVLSSELACEVARECLQEGAAAAATTIDLNATPQIEEEGAGTSYPSRSALAAALLTRLALGRKSTDNISVIVIDLKRS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8086349 8093022 + ClCG05G007620.2 Cla05g00826 272316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00826 491 PANTHER ALPHABET, ISOFORM E-RELATED 93 351 - -
Cla05g00826 491 Pfam Protein phosphatase 2C 147 438 IPR001932 -
Cla05g00826 491 MobiDBLite consensus disorder prediction 82 100 - -
Cla05g00826 491 MobiDBLite consensus disorder prediction 101 118 - -
Cla05g00826 491 ProSitePatterns PPM-type phosphatase domain signature. 182 190 IPR000222 GO:0043169
Cla05g00826 491 ProSiteProfiles PPM-type phosphatase domain profile. 146 488 IPR001932 -
Cla05g00826 491 MobiDBLite consensus disorder prediction 119 135 - -
Cla05g00826 491 SUPERFAMILY PP2C-like 140 489 IPR036457 -
Cla05g00826 491 SMART PP2C_4 136 486 IPR001932 -
Cla05g00826 491 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 379 490 - -
Cla05g00826 491 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 93 351 - -
Cla05g00826 491 MobiDBLite consensus disorder prediction 77 142 - -
Cla05g00826 491 PANTHER ALPHABET, ISOFORM E-RELATED 379 490 - -
Cla05g00826 491 CDD PP2Cc 146 488 IPR001932 -
Cla05g00826 491 Gene3D - 139 491 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00826 Cla-Chr5:8086349 Cla07g01318 Cla-Chr7:30357883 1.20E-70 dispersed
Cla05g00826 Cla-Chr5:8086349 Cla03g00118 Cla-Chr3:1202141 4.96E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00826 K14497 - csv:101206634 682.945