Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00830 | ATGTGTTTTTTTTTTAGTTTTTGTTTCAAAGAATTAGATAAGGGATCGATCATCATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCCTGTGAACTCTCTGTGCTCTGTGATGTTGATGTTGCTCTCATCATTTTCTCTAGTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGGCTGAGATAATGCTCCAAAAATTAGCAGACTTACGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTGGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAAGAAGATCATCCAATGAATTACGAAGTTGTGGGAGCTGACCCAAACATGAACACCACGAGGTACTTTGATCCCCAAGAAGAAGAAGAAGAGGGCAGGGCCATGATGGAAGCTGGGAATAATGACTTAATCCCAGATTGGCTACTTTGA | 750 | 41.6 | MCFFFSFCFKELDKGSIIMGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEEEQQCMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMMEAGNNDLIPDWLL | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8142021 | 8152554 | - | ClCG05G007650.2 | Cla05g00830 | 272320 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00830 | 249 | ProSiteProfiles | K-box domain profile. | 103 | 193 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla05g00830 | 249 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 12 | 195 | - | - | |
Cla05g00830 | 249 | SUPERFAMILY | SRF-like | 20 | 103 | IPR036879 | GO:0003677|GO:0046983 | |
Cla05g00830 | 249 | MobiDBLite | consensus disorder prediction | 185 | 208 | - | - | |
Cla05g00830 | 249 | Gene3D | - | 31 | 109 | IPR036879 | GO:0003677|GO:0046983 | |
Cla05g00830 | 249 | PRINTS | MADS domain signature | 21 | 41 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00830 | 249 | PRINTS | MADS domain signature | 41 | 56 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00830 | 249 | PRINTS | MADS domain signature | 56 | 77 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00830 | 249 | SMART | madsneu2 | 19 | 78 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00830 | 249 | Pfam | K-box region | 107 | 187 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla05g00830 | 249 | MobiDBLite | consensus disorder prediction | 185 | 249 | - | - | |
Cla05g00830 | 249 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 28 | 75 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00830 | 249 | ProSiteProfiles | MADS-box domain profile. | 19 | 79 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00830 | 249 | ProSitePatterns | MADS-box domain signature. | 21 | 75 | IPR002100 | GO:0003677|GO:0046983 | |
Cla05g00830 | 249 | PANTHER | TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 | 12 | 195 | - | - | |
Cla05g00830 | 249 | CDD | MADS_MEF2_like | 20 | 96 | IPR033896 | GO:0000977|GO:0045944 | |
Cla05g00830 | 249 | Coils | Coil | 169 | 189 | - | - | |
Cla05g00830 | 249 | Coils | Coil | 137 | 157 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00830 | Cla-Chr5:8142021 | Cla07g01523 | Cla-Chr7:32406091 | 2.36E-57 | dispersed | |
Cla05g00830 | Cla-Chr5:8142021 | Cla06g00019 | Cla-Chr6:245023 | 2.80E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61049 | PF01486 | K-box | 1.10E-23 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00830 | K09264 | - | csv:101212022 | 372.859 |