Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00830 ATGTGTTTTTTTTTTAGTTTTTGTTTCAAAGAATTAGATAAGGGATCGATCATCATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCCTGTGAACTCTCTGTGCTCTGTGATGTTGATGTTGCTCTCATCATTTTCTCTAGTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGGCTGAGATAATGCTCCAAAAATTAGCAGACTTACGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTGGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAAGAAGATCATCCAATGAATTACGAAGTTGTGGGAGCTGACCCAAACATGAACACCACGAGGTACTTTGATCCCCAAGAAGAAGAAGAAGAGGGCAGGGCCATGATGGAAGCTGGGAATAATGACTTAATCCCAGATTGGCTACTTTGA 750 41.6 MCFFFSFCFKELDKGSIIMGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEEEQQCMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMMEAGNNDLIPDWLL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8142021 8152554 - ClCG05G007650.2 Cla05g00830 272320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00830 249 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla05g00830 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 195 - -
Cla05g00830 249 SUPERFAMILY SRF-like 20 103 IPR036879 GO:0003677|GO:0046983
Cla05g00830 249 MobiDBLite consensus disorder prediction 185 208 - -
Cla05g00830 249 Gene3D - 31 109 IPR036879 GO:0003677|GO:0046983
Cla05g00830 249 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Cla05g00830 249 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Cla05g00830 249 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Cla05g00830 249 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Cla05g00830 249 Pfam K-box region 107 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla05g00830 249 MobiDBLite consensus disorder prediction 185 249 - -
Cla05g00830 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Cla05g00830 249 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Cla05g00830 249 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Cla05g00830 249 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 12 195 - -
Cla05g00830 249 CDD MADS_MEF2_like 20 96 IPR033896 GO:0000977|GO:0045944
Cla05g00830 249 Coils Coil 169 189 - -
Cla05g00830 249 Coils Coil 137 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00830 Cla-Chr5:8142021 Cla07g01523 Cla-Chr7:32406091 2.36E-57 dispersed
Cla05g00830 Cla-Chr5:8142021 Cla06g00019 Cla-Chr6:245023 2.80E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61049 PF01486 K-box 1.10E-23 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00830 K09264 - csv:101212022 372.859