Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00836 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCAACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTATTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTCGCAAGCTCTGAGATGCCAAGGATTGTAGAGCGCTATCGCAAATGTTCAAGAGATGGGAAAAACAGTACCAGATTTGACAGACAACTCCAATTGCAGCAATTAAGACTTGAAGCTGAAAGCATTAATAAGAAGATGGAGCTGCTGCAACTTTCTCAAAGGAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCATGATGAACTTCAAGTACTTGATGCTCAGCTTCAGCGAAGCCTCTTTCAAATTAGGGCCAGAAAGGCTCAGCTGTACAAGGAGCAGATACAACAACTACAAGAAAAGGAAAGACTCCTTTCAGAAGAAAACAGGAAATTGTCTTTAAAGGCCGCAGCTGACGATTGGGCCGCCACGCACGGCTGCCGGAGGAGCTCAAGTTCGGTAGTCGACACCCAATTGGCAATTTGA 594 43.77 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCSRDGKNSTRFDRQLQLQQLRLEAESINKKMELLQLSQRKLLGYGLDSCSHDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLQEKERLLSEENRKLSLKAAADDWAATHGCRRSSSSVVDTQLAI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8269944 8278322 - ClCG05G007710.2 Cla05g00836 272326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00836 197 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Cla05g00836 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla05g00836 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla05g00836 197 PANTHER MADS-BOX PROTEIN SOC1 1 181 - -
Cla05g00836 197 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla05g00836 197 Coils Coil 88 108 - -
Cla05g00836 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla05g00836 197 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla05g00836 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla05g00836 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla05g00836 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla05g00836 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla05g00836 197 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Cla05g00836 197 Coils Coil 144 171 - -
Cla05g00836 197 PANTHER MADS BOX PROTEIN 1 181 - -
Cla05g00836 197 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00524 Cla05g00836 CCT
Cla01g00524 Cla05g00836 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00836 Cla-Chr5:8269944 Cla06g00020 Cla-Chr6:251505 8.86E-63 dispersed
Cla01g00524 Cla-Chr1:5706644 Cla05g00836 Cla-Chr5:8269944 3.18E-68 wgd
Cla01g00316 Cla-Chr1:3354653 Cla05g00836 Cla-Chr5:8269944 6.07E-61 wgd
Cla05g00211 Cla-Chr5:1884372 Cla05g00836 Cla-Chr5:8269944 4.07E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61050 PF01486 K-box 3.20E-21 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00836 - - csv:101211542 308.916