Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00838 ATGTTCCGAACAATGGCAAAAAATGTATCACTCTTATTTCTAATGATGATGGTTTGTCTGTCGGAAGGAGTTCTTGATAGCCATTATTACTCAAAAACATGTCCTAGTGCAGAAAAAATCATCCTCCAAACCGTCTACAATGCTTCCATTAATGACCCCAAAGTCCCTGCTCGTCTTCTCAGGCTCTTCTTCCATGACTGTTTCATAAGGGGATGTGATGCATCAGTGTTGATAGACTCGACGCCAGAGAATCAGGCAGAGAAAGAAGCACCTCCAAACATCTCGCTAAGGTCGTTCTATGTAATCGACGAGGCCAAAGCCAAGCTTGAAAGTGCATGCCCACATACTGTTTCTTGTGCTGATATTGTCGCCATTGCTGCTAGAGATGTAGTAACTTTGTCTGGAGGCCCGTATTGGAGTGTACTCAAAGGAAGGAAAGATGGGAAGATTTCCAAAGCTTCAGAGACCAACTTGCCAGCTCCAACTTTCAATGTGTCTCAACTCATCCAGAGCTTTGCAAACAGAGGATTAGAAGTTAAGGACTTGATTGCTCTATCTGGGGCTCACACACTTGGATTCTCACACTGTTCTTCCTTTCAATCTAGACTTCGCAACTTCAGCTCCATTCATGAAATTGATCCTGCTTTGGAATCTGGGTTCGCCCAAATTCTAAGAAACAAATGTCCAAAACCAAATTTGGACAAAAATGCTGGACAGTTCTTGGACCCAACTTCCTCAACCTTTGACAATGTGTATTACAAGAGACTGTTGGAAGGAAAGGGTGTGTTTGGTTCAGATCAAGCGTTGTTTGCTGATTCTAGAACTAGAGGGCTTGTTGGATTGTTTGCTCAAGATCAGAACTTGTTCTTTAAGGAGTTCGCAACTTCAATGGTGAATTTGGGTAATGTTGGGGTAAGTCAAAATGGAAATGTCAGACTCAATTGTCGGGTGGTGAATTGA 960 42.6 MFRTMAKNVSLLFLMMMVCLSEGVLDSHYYSKTCPSAEKIILQTVYNASINDPKVPARLLRLFFHDCFIRGCDASVLIDSTPENQAEKEAPPNISLRSFYVIDEAKAKLESACPHTVSCADIVAIAARDVVTLSGGPYWSVLKGRKDGKISKASETNLPAPTFNVSQLIQSFANRGLEVKDLIALSGAHTLGFSHCSSFQSRLRNFSSIHEIDPALESGFAQILRNKCPKPNLDKNAGQFLDPTSSTFDNVYYKRLLEGKGVFGSDQALFADSRTRGLVGLFAQDQNLFFKEFATSMVNLGNVGVSQNGNVRLNCRVVN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8305976 8307370 - ClCG05G007730.1 Cla05g00838 272328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00838 319 PANTHER PEROXIDASE 66 11 318 - -
Cla05g00838 319 Gene3D - 28 319 - -
Cla05g00838 319 CDD secretory_peroxidase 25 318 IPR033905 GO:0004601|GO:0042744
Cla05g00838 319 Pfam Peroxidase 46 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 ProSiteProfiles Plant heme peroxidase family profile. 24 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PANTHER PEROXIDASE 25-RELATED 11 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 Gene3D Peroxidase, domain 2 159 300 - -
Cla05g00838 319 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 SUPERFAMILY Heme-dependent peroxidases 25 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla05g00838 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02003 Cla-Chr1:34663108 Cla05g00838 Cla-Chr5:8305976 4.37E-120 dispersed
Cla04g00296 Cla-Chr4:10467542 Cla05g00838 Cla-Chr5:8305976 3.82E-95 dispersed
Cla05g00838 Cla-Chr5:8305976 Cla02g00175 Cla-Chr2:1795194 6.88E-42 dispersed
Cla05g01659 Cla-Chr5:28252564 Cla05g00838 Cla-Chr5:8305976 2.42E-83 dispersed
Cla06g00517 Cla-Chr6:6258343 Cla05g00838 Cla-Chr5:8305976 2.63E-83 dispersed
Cla11g00911 Cla-Chr11:15464735 Cla05g00838 Cla-Chr5:8305976 5.23E-80 dispersed
Cla05g00838 Cla-Chr5:8305976 Cla08g01404 Cla-Chr8:26939999 1.08E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00838 K00430 - csv:101210306 580.867