Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00845 | ATGGACTCTTTTTCAACTTTTTATGAAGACTACTTCTCCAGTTCCGAGAGTAGTAATTCCCGCCGCCCTATTTTTTCCGATGAGGATATTATGTTGGCGGCCAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGGTCTACAGAGGGGTCAGGAGGAGAAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCTGCCATCGCCCTTAGAGGTCTCACTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCTGTGCCGGCGTCTGCTGACGCCAGAGATATCCGGAAGGCGGCAGCAGAGGCGGCGGAGGCATTCCGACCGGTTGAGTCATGTGGGTCTTCTGCTGACGACTCAAGGACGGAAAATGAGATAACGGCGGAGACGACGCAGGAAAACGTGAATTACATGGATGAGGAGGCAGTTTTTGGGATGCCAGGTTTTTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA | 636 | 52.36 | MDSFSTFYEDYFSSSESSNSRRPIFSDEDIMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGLTACLNFADSAWRLPVPASADARDIRKAAAEAAEAFRPVESCGSSADDSRTENEITAETTQENVNYMDEEAVFGMPGFLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8356626 | 8357261 | - | ClCG05G007780.1 | Cla05g00845 | 272335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00845 | 211 | ProSiteProfiles | AP2/ERF domain profile. | 53 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00845 | 211 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 14 | 211 | IPR045277 | GO:0003700 | |
Cla05g00845 | 211 | CDD | AP2 | 54 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00845 | 211 | PRINTS | Ethylene responsive element binding protein signature | 54 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00845 | 211 | PRINTS | Ethylene responsive element binding protein signature | 76 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00845 | 211 | Gene3D | AP2/ERF domain | 53 | 111 | IPR036955 | GO:0003700|GO:0006355 | |
Cla05g00845 | 211 | Pfam | AP2 domain | 52 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Cla05g00845 | 211 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 14 | 211 | - | - | |
Cla05g00845 | 211 | SUPERFAMILY | DNA-binding domain | 53 | 112 | IPR016177 | GO:0003677 | |
Cla05g00845 | 211 | SMART | rav1_2 | 53 | 116 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g00552 | Cla05g00845 | CCT | |
Cla01g00552 | Cla05g00845 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00302 | Cla-Chr1:3196725 | Cla05g00845 | Cla-Chr5:8356626 | 1.85E-67 | dispersed | |
Cla05g00845 | Cla-Chr5:8356626 | Cla10g01829 | Cla-Chr10:34256760 | 2.01E-42 | dispersed | |
Cla05g00845 | Cla-Chr5:8356626 | Cla05g00847 | Cla-Chr5:8378255 | 3.21E-35 | proximal | |
Cla01g00552 | Cla-Chr1:6088208 | Cla05g00845 | Cla-Chr5:8356626 | 7.23E-81 | transposed | |
Cla01g00301 | Cla-Chr1:3166749 | Cla05g00845 | Cla-Chr5:8356626 | 3.74E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61052 | PF00847 | AP2 | 1.30E-15 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00845 | - | K09286 | csv:101220749 | 339.347 |