Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00845 ATGGACTCTTTTTCAACTTTTTATGAAGACTACTTCTCCAGTTCCGAGAGTAGTAATTCCCGCCGCCCTATTTTTTCCGATGAGGATATTATGTTGGCGGCCAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGGTCTACAGAGGGGTCAGGAGGAGAAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCTGCCATCGCCCTTAGAGGTCTCACTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCTGTGCCGGCGTCTGCTGACGCCAGAGATATCCGGAAGGCGGCAGCAGAGGCGGCGGAGGCATTCCGACCGGTTGAGTCATGTGGGTCTTCTGCTGACGACTCAAGGACGGAAAATGAGATAACGGCGGAGACGACGCAGGAAAACGTGAATTACATGGATGAGGAGGCAGTTTTTGGGATGCCAGGTTTTTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA 636 52.36 MDSFSTFYEDYFSSSESSNSRRPIFSDEDIMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGLTACLNFADSAWRLPVPASADARDIRKAAAEAAEAFRPVESCGSSADDSRTENEITAETTQENVNYMDEEAVFGMPGFLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8356626 8357261 - ClCG05G007780.1 Cla05g00845 272335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00845 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Cla05g00845 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 211 IPR045277 GO:0003700
Cla05g00845 211 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Cla05g00845 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Cla05g00845 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Cla05g00845 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Cla05g00845 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Cla05g00845 211 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 14 211 - -
Cla05g00845 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Cla05g00845 211 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00552 Cla05g00845 CCT
Cla01g00552 Cla05g00845 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00302 Cla-Chr1:3196725 Cla05g00845 Cla-Chr5:8356626 1.85E-67 dispersed
Cla05g00845 Cla-Chr5:8356626 Cla10g01829 Cla-Chr10:34256760 2.01E-42 dispersed
Cla05g00845 Cla-Chr5:8356626 Cla05g00847 Cla-Chr5:8378255 3.21E-35 proximal
Cla01g00552 Cla-Chr1:6088208 Cla05g00845 Cla-Chr5:8356626 7.23E-81 transposed
Cla01g00301 Cla-Chr1:3166749 Cla05g00845 Cla-Chr5:8356626 3.74E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61052 PF00847 AP2 1.30E-15 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00845 - K09286 csv:101220749 339.347