Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00847 ATGTCTGATAATAATAATAATTCTCCCGGCCGCCCTGGTCGCCACCACCTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACATACCCCACTCCCGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCATGCCTCCCTTAATTTCCCCGACTCTCGTAATTCCTATCGCATTCCTCTTTCCACTTCCGCTTCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCTGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCACACACCGACGGCGGTGGGCCCTCCTCCCATGCCACGGCGGATTCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA 579 55.61 MSDNNNNSPGRPGRHHLFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPHASLNFPDSRNSYRIPLSTSASDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSHTDGGGPSSHATADSSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8378255 8378833 - ClCG05G007787.1 Cla05g00847 272337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00847 192 SMART rav1_2 17 79 IPR001471 GO:0003700|GO:0006355
Cla05g00847 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 10 190 - -
Cla05g00847 192 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Cla05g00847 192 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700|GO:0006355
Cla05g00847 192 CDD AP2 18 75 IPR001471 GO:0003700|GO:0006355
Cla05g00847 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 190 - -
Cla05g00847 192 MobiDBLite consensus disorder prediction 103 137 - -
Cla05g00847 192 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Cla05g00847 192 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Cla05g00847 192 MobiDBLite consensus disorder prediction 169 192 - -
Cla05g00847 192 Pfam AP2 domain 19 65 IPR001471 GO:0003700|GO:0006355
Cla05g00847 192 MobiDBLite consensus disorder prediction 103 145 - -
Cla05g00847 192 MobiDBLite consensus disorder prediction 158 192 - -
Cla05g00847 192 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00301 Cla05g00847 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00847 Cla-Chr5:8378255 Cla10g00348 Cla-Chr10:4644933 8.19E-49 dispersed
Cla05g00845 Cla-Chr5:8356626 Cla05g00847 Cla-Chr5:8378255 3.21E-35 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61053 PF00847 AP2 3.00E-10 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00847 - - csv:101217355 263.848