Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00855 ATGGCATCTTCTCGCCTGACTGGAGGATTAGCTCAGTCTCCATCAAGTTCTGGGATTTTCTACCAAGGAGAAGGGCAGTCCCCAGCTATTGTTAATTCTCATTTGAGCCAATCATTTGCAAATTCATCAAATTCAATTCCAGGAACTGGATGTTCTGATTTTGGTCCAGTGTCCGGAGACATGAACAATGCAGTTTTAAATAGTGTGGCAAATTCAGGACCCAGTGTGGGTGCAAGTTCATTAGTTACGGATGCAAACTCTGCACTTTCAGGGGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACAGAGTCGTACATGCGTTTGCCTGCATCGCCTATGTCATTCAATTCAAATAACATTAGTGTTTCGGGGTCCTCAGTTATAGATGGATCCTGTGTTGTGCAGCAAAATTCTCAACAGGACCAAAATATCCAACACATACAGCAACAGACGCAGCCAGGTGCTTCACATGCCACATCATTACCAACATCACAAATAGGCCAAGTATCACTTCCGTTGGGCGGTAAACATCAGGGATCTTTCATTCCAGATCCAAACAGTTATTCTCAGGTGCAGAAGAAACCACGACTGGATATAAAGCCGGAAGATGTGCTGCAACAGCAAGTCTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCAGTCACAAAACCGTAACTCACAGTTACAAGCTTTATTTCAACAGCAAAGAATGCGGCAACAGCAGCAGATTTTGCAGTCTCTACCTCAGTACAGGGCTCAGCTTCAGCAACAGCAGCAGCAGATACAGTTGAGGCAGCAATTGCAACAGCAGGTAATGCAGCCTGTATCACCCATGAAGCGGCCCCCATATGATGCTGGTGGTGTTTGTGCTCGCCGGCTGATGCAATATTTATATCATCAGCGGCAAAGACCTCCTGAAAATAGTATAGCCTACTGGCGAAAGTTTGTAGCAGAGTATTACTCTCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTGTATGAGAATGTTGGCCACCATGCTCTTGGTGTGTTTCCTCAGGCAGCTATGGATGCGTGGCAGTGTGACATTTGTGGTTCCAAATCAGGGAGGGGATTTGAGGCTACGTTTGAAGTATTACCAAGACTCAGCGAGATCAAATTTGGAAGTGGAGTTATTGATGAGCTTTTATTTCTGGACCTTCCCCAAGAAAGAAGATTTTCTACTGGACTTATGATGTTAGAGTATGGAAAAGCAATTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGCGAGGGTCAGCTTCGTATCATATTCACTCAAGATTTGAAGATTTTGTGTTGGGAATTTTGTGCTCGGCGTCATGAAGAACTTCTTCCTCGTAGGTTGGTTGCGCCTCAGGTGAATCAGCTGGTACAGGTTGCCCAGAAATGCCAAAACACAATTGCTGAAAGTGGGCCGGATGGTGTTTCTCAGAAAGATTTGCAGACAAATAGCAATATGAGCCAAAACCTTCCTGAATGCATCAATTTCTGGCCAAGCTGCTTCTGTTGTACACTGGTACTGACAGCTGGTCGTCAGCTTGCTAAGAGTCTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCTCTAAAAGATACGTCAGGTGTTTGCAGATATCAGAGGTTGTCAACAGTATGAAAGATCTGATTGGTTTCTGCCGGGATCAAAAAGTTGGGCCTATCGAGGGCTTGAAGAATTATCCTAGACATGCCACTGCAGCCAAGCTCCAAATGCAAAAAATGCAGGAGATGGAACAGTTAGCGAGTATTCAAGGTCTTCCCACCGACCGCAACACAATTAATAAGCTGATGACATTGCATCCTGAACTTGATAACCATGGGATTAATAACCATCAGATGATTGGTCGAGGAGGTTTCAGTGGTTCAGCACAAGCTGCTTTGGCAATGACTACATACCAGAATATCCTCATGAGACAGAACTCTATGAATTCCAACCCCAGCCCACATCAACAGGAGGCCTCATCTTCTTTCAATAATCCCAACTATAATCCATCCCCTACACTCCAGGGGACTGTATCCCTGATGCCTGGATCCGTACAGAACTCCTCTGTTGGTGGCTTTTCAGGCGCTCAGCAAGCCTTGCAAAAGCAATCGCAGCAGCTGCAACATCATCCACCAAATCCTGGCTCCTTGGTCCAGCAAAATCATCATCAGACGATTCAAGGTGGCCAGGCCCTACAACAACAGATGATCCAGCAACTACTGCAGATGTCAAGTAACAATAAGAGTGCCGGTTTACAACAGCAACCCCTTACTGGACCAAATGCAAATAGAAGTTTAGGAAGAAGGGGCATGGGTTTTGTGGGCAACACCTCAGTTGCAGCTGTGGCATCTGGAAATATGTCTGGTAGCAACGTCCCTGGTCCGAGTAGGAGCAATAGCTTCAAAGCTGCTTCAAATAGCGAGTCCTCTGCTGGTAACAGTGAATTCAATCAGAAGGGTTCAGATTTCCCGCAAGATCTTCATCTGCCAGAGAATCTGGTTGAAGATATAGGCCAAGATTTCCCTGAAAACGGGTTTATTAACAATGACCTTGATGAGGATTTGGGTTATGTCTGGAAGGCTTGA 2613 45.39 MASSRLTGGLAQSPSSSGIFYQGEGQSPAIVNSHLSQSFANSSNSIPGTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQNIQHIQQQTQPGASHATSLPTSQIGQVSLPLGGKHQGSFIPDPNSYSQVQKKPRLDIKPEDVLQQQVLQQLFQRQDSMQSQNRNSQLQALFQQQRMRQQQQILQSLPQYRAQLQQQQQQIQLRQQLQQQVMQPVSPMKRPPYDAGGVCARRLMQYLYHQRQRPPENSIAYWRKFVAEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLDLPQERRFSTGLMMLEYGKAIQESVYEQLRVVREGQLRIIFTQDLKILCWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQNTIAESGPDGVSQKDLQTNSNMSQNLPECINFWPSCFCCTLVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQMQKMQEMEQLASIQGLPTDRNTINKLMTLHPELDNHGINNHQMIGRGGFSGSAQAALAMTTYQNILMRQNSMNSNPSPHQQEASSSFNNPNYNPSPTLQGTVSLMPGSVQNSSVGGFSGAQQALQKQSQQLQHHPPNPGSLVQQNHHQTIQGGQALQQQMIQQLLQMSSNNKSAGLQQQPLTGPNANRSLGRRGMGFVGNTSVAAVASGNMSGSNVPGPSRSNSFKAASNSESSAGNSEFNQKGSDFPQDLHLPENLVEDIGQDFPENGFINNDLDEDLGYVWKA 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8471780 8478455 + ClCG05G007850.2 Cla05g00855 272345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00855 870 MobiDBLite consensus disorder prediction 756 771 - -
Cla05g00855 870 PANTHER LIM DOMAIN-BINDING PROTEIN 184 863 IPR029005 -
Cla05g00855 870 MobiDBLite consensus disorder prediction 140 194 - -
Cla05g00855 870 MobiDBLite consensus disorder prediction 795 836 - -
Cla05g00855 870 MobiDBLite consensus disorder prediction 756 778 - -
Cla05g00855 870 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 151 - -
Cla05g00855 870 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 184 863 - -
Cla05g00855 870 MobiDBLite consensus disorder prediction 140 172 - -
Cla05g00855 870 MobiDBLite consensus disorder prediction 795 830 - -
Cla05g00855 870 MobiDBLite consensus disorder prediction 655 740 - -
Cla05g00855 870 Pfam LIM-domain binding protein 294 573 IPR029005 -
Cla05g00855 870 PANTHER LIM DOMAIN-BINDING PROTEIN 5 151 IPR029005 -
Cla05g00855 870 MobiDBLite consensus disorder prediction 1 22 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00550 Cla05g00855 CCT
Cla01g00550 Cla05g00855 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00855 Cla-Chr5:8471780 Cla08g00655 Cla-Chr8:18793469 1.14E-108 dispersed
Cla08g00284 Cla-Chr8:6122329 Cla05g00855 Cla-Chr5:8471780 4.16E-89 transposed
Cla01g00550 Cla-Chr1:6019671 Cla05g00855 Cla-Chr5:8471780 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00855 - - csv:105434391 1372.45