Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00856 ATGGCGGACGACGATTACAATGACCTCGACATGGGGAATACTGGACGGTACAGATATTTTTCAGCTCCTATATTAATAAGTGATTTTTGCTGCAGATATGAAGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATAATAACAACGATGATGTTCCTGGTGAACCTGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACTAAGTATGAGCGTGCTAGGATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCAGTGATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGGTTAGGCCTCTTAGATCTTGTTCTTTTTATCTCTAGCATTCCGATTCACCTGCCTGCAGGGGTGTGCAGAAAACTGAAAACAAGCGAACCAGTTGGTTGGGTTGGTTCTTTATGTGCTTATGAAGACTGGGGCGTTGATGAATTGATTGTGGAGGACTCTTGGAAAAGGCAAGTTGGCGGCGCTTGA 609 45.48 MADDDYNDLDMGNTGRYRYFSAPILISDFCCRYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGRLGLLDLVLFISSIPIHLPAGVCRKLKTSEPVGWVGSLCAYEDWGVDELIVEDSWKRQVGGA 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8479093 8482071 - ClCG05G007860.1 Cla05g00856 272346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00856 202 SMART RNA_pol_Rpb6_2 78 131 IPR006110 GO:0003677|GO:0003899|GO:0006351
Cla05g00856 202 SUPERFAMILY RPB6/omega subunit-like 33 142 IPR036161 GO:0003677|GO:0003899|GO:0006351
Cla05g00856 202 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 85 99 IPR020708 GO:0003677|GO:0003899|GO:0006351
Cla05g00856 202 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 32 141 - -
Cla05g00856 202 PANTHER DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B 32 141 - -
Cla05g00856 202 MobiDBLite consensus disorder prediction 32 79 - -
Cla05g00856 202 PANTHER DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B 180 201 - -
Cla05g00856 202 PIRSF RPB6 27 144 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Cla05g00856 202 PIRSF RPB6 178 193 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Cla05g00856 202 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 82 137 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cla05g00856 202 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 180 201 - -
Cla05g00856 202 PIRSF RpoK/RPB6 27 151 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cla05g00856 202 PIRSF RpoK/RPB6 177 193 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cla05g00856 202 Pfam RNA polymerase Rpb6 80 131 IPR006110 GO:0003677|GO:0003899|GO:0006351
Cla05g00856 202 MobiDBLite consensus disorder prediction 37 70 - -
Cla05g00856 202 Gene3D - 30 148 IPR036161 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00856 K03014 RPABC2, RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 - csv:101219320 193.741
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00856 Cla-Chr5:8479093 Cla05g01730 Cla-Chr5:29112059 7.72E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g605 . . . . Bpe03g00134 . . Bma14g02062 Cmo16g00151 Cmo18g01251 . . . . Sed07g1061 . Cpe14g00122 Bhi01g01356 Tan01g0284 Cmetu04g3099 . Hepe07g0182 Mch10g0178 . . . . . . . . . Cone5ag0839 . . Lsi05g01256 . . Cme06g00972 . Blo09g00082 . . . . . . . . . Cma16g00144 Cma18g01228 Car16g00125 Car18g01132 Cpe09g00105 . . . . . . . . Cla05g00856 Cam05g0942 Cec05g0947 Cco05g0947 Clacu05g0929 Cmu05g0887 Cre05g0972 . Csa03g01686 Chy06g00919 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003726 1 2 1 1 1 1 2 2 1 1 1 2 2 1 2 2 2 2 2 2 2 1 2 1 1 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00856 Cla_Chr05 FPKM 44.187149 46.116638 50.191944 49.965881 48.253277 42.699818 48.137936 67.077827 66.981911 71.862358