Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00857 ATGGCTTCAAAACAATCTTCAAAACAATCCATTATCTCCCCTTGGAGAAAAATCTACACCATTTTTCTAATCCTCTTCCTCTGTTTTTTCTCTTACTTTATCGGCCGCCGCCAACAACAACAACCCTCCGCCGCCCCCCTCCGTTGCACCACCATCACTGCAAAACACAACAACTATTTTCCGGCATGTGGGGTGGAGTACAGCGAGTACACGCCATGTGAGGACACGAAAAGGTCTTTGAAGTTCAGCAGAGACAGGCTGATTTACAGAGAGAGGCACTGCCCGGAAAAGGAAGAGATTTTGAAGTGCCGGATTCCTCCGCCGCCTGGGTATCGGAATCCGTTCTCGTGGCCGGTGAGTAGAGATTTGGCGTGGTACGTGAATGTGCCGCATAAGCATCTGACGGTGGAGAAAGCGGTGCAGAATTGGATTAGATATGAAGGCGATACGTTTAGATTTCCGGGCGGAGGGACGATGTTCCCTGACGGAGCTGATGCTTACATTGATAATATTGGGAAATTAATTAATCTCAAAGATGGGCCAATGCCAACGGGCGTGCGCGTGGTGGGGCTTATGCGCGCACCGGCCCCAACCATCAGCGCCGCTTCTCTCATTCTCTTCTTTCTCCTCCTCCTCTCATCTTCATGCATAATGGTGGTGTTGTCGGCCTCAGACGCCGAAACACTGCTTCTATTCAAGCGGTCATTGACGTCAGCAGTGGCTCTTAACAACTGGAACCCATCGGTCCCTCCTTGCGAGAACAACAAGGCCAATTGGGCGGGTGTGCTTTGTTTGAATGGACATGTTAGGGGTCTAAGGCTTGAGAATATGGGGCTTAAGGGAGAGGTTGATGTGAATTCGTTGGTTTCTATGACTCGCTTGAGGACACTGAGCTTCATGAACAACACATTGGTTGGGGGTTGGCCTCGTGTCATAAGCAAATTAGGGAGTCTACGTTCTGTTTATCTTTCCTATAACCATTTTTCAGGACAAATCCCAGACGATGCTTTTGCGGGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAACGGCCCCATTCCCTCATCTCTCGCTTCACTGTCTAGGCTTATGGAGTTGAGACTTGATGGAAACAAATTCAAAGGCCAAGTCCCTCGATTTCAAATCGATACTTTGAAGAAACTTAATGTTTCCAACAATGAATTGGAGGGCCCAATTCCTACTTATCCCATATGGATCCTTCCTGCTTTGCAGGTGGGAAGTTGGGGAGCTTATCTACTGTCGAGGGACATTGTAACGATGTCGTTTGCGCCAAGGGATACTCATGAAGCTCAAGTTCAGTTTGCTTTGGAGAGAGGAGTTCCTGCACTCATTGGCATTCTTGCCTCTAAGAGACTTCCTTATCCTTCAAATGCCTTTGACATGGCTCATTGCTCTCGCTGCCTTATCCCTTGGCCACAATATGATGGGATCCTCCTCATTGAAGTCGATCGAGTTCTACGCCCCGGCGGATACTGGATTTTATCAGGCCCTCCAATCAACTGGAAGACGCACTGGAAAGGTTGGGAAAGAACAAAGGAAGATTTGAATTCTGAACAGCTTGCCATTGAAAAGGTAGCCAAAAGCCTCTGTTGGACTAAACTAGTGGAAGATGGTGATATAGCCATTTGGCAAAAGCCTATCAATCACTTCAACTGCAAACTCAACCGCAAGATCACCAAGAATCCTCCTTTCTGTAATGCCCAAGATCCTGACAGAGCTTGGTATACGGATATGCAAGATTGTTTAACGCACTTGCCTGAAGTTTCAAACAGAGGGAAGTTGGCAAGATGGCCTGAAAGGCTAAATGCAATCCCACATAGGATTAGCAGAGGAACTGTGAAAGGGGTGACAGAAGAAACTTTCATTCATGATTCTGAACTATGGAAGAAGAGGTTGTCATATTACAGAACCATCAACAATCAGCTGAGTAAGCCCGGACGGTACCGCAATTTCTTGGACATGAATGCTTTTTTGGGTGGATTTGCTGCTGCTCTGGTTGATGATCCAGTTTGGGTGATGAACGTGGTCCCTGTGGATGTCAAAGTCAATACGCTCGGAGTCATATACGATAGGGGTTTAATCGGCTCATACCAAGATTGGTGTGAGGCGATGTCTACTTATCCAAGAACTTATGACTTCATTCATGCTGATTCAGTTTTTAGCCTCTACGAGAATAGATGTGAAATGGAAGATATTCTCCTTGAAATGGACAGAATTCTGAGGCCAGAAGGAAGCGTAATATTCCGAGAGAACATCGACATTTTGGCGAAAATCAAGACGATAACCAATAAGTTGAATTGGAGCAGTCAAATTGTGGATCATGAAGATGGACCTTATCATATGGAAAAACTTCTATTTGCAGTCAAAAACTATTGGACAGCACCTCCTGAACTTTCTGATCAACAACAAGGATCTAAAGCAAATTAA 2460 45.61 MASKQSSKQSIISPWRKIYTIFLILFLCFFSYFIGRRQQQQPSAAPLRCTTITAKHNNYFPACGVEYSEYTPCEDTKRSLKFSRDRLIYRERHCPEKEEILKCRIPPPPGYRNPFSWPVSRDLAWYVNVPHKHLTVEKAVQNWIRYEGDTFRFPGGGTMFPDGADAYIDNIGKLINLKDGPMPTGVRVVGLMRAPAPTISAASLILFFLLLLSSSCIMVVLSASDAETLLLFKRSLTSAVALNNWNPSVPPCENNKANWAGVLCLNGHVRGLRLENMGLKGEVDVNSLVSMTRLRTLSFMNNTLVGGWPRVISKLGSLRSVYLSYNHFSGQIPDDAFAGMKFLKKVFLTNNEFNGPIPSSLASLSRLMELRLDGNKFKGQVPRFQIDTLKKLNVSNNELEGPIPTYPIWILPALQVGSWGAYLLSRDIVTMSFAPRDTHEAQVQFALERGVPALIGILASKRLPYPSNAFDMAHCSRCLIPWPQYDGILLIEVDRVLRPGGYWILSGPPINWKTHWKGWERTKEDLNSEQLAIEKVAKSLCWTKLVEDGDIAIWQKPINHFNCKLNRKITKNPPFCNAQDPDRAWYTDMQDCLTHLPEVSNRGKLARWPERLNAIPHRISRGTVKGVTEETFIHDSELWKKRLSYYRTINNQLSKPGRYRNFLDMNAFLGGFAAALVDDPVWVMNVVPVDVKVNTLGVIYDRGLIGSYQDWCEAMSTYPRTYDFIHADSVFSLYENRCEMEDILLEMDRILRPEGSVIFRENIDILAKIKTITNKLNWSSQIVDHEDGPYHMEKLLFAVKNYWTAPPELSDQQQGSKAN 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8496715 8503869 + ClCG05G007870.1 Cla05g00857 272347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00857 819 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 607 795 IPR029063 -
Cla05g00857 819 Gene3D Ribonuclease Inhibitor 222 423 IPR032675 -
Cla05g00857 819 SUPERFAMILY L domain-like 249 415 - -
Cla05g00857 819 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 417 523 IPR029063 -
Cla05g00857 819 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 416 800 IPR004159 GO:0008168
Cla05g00857 819 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 69 178 IPR004159 GO:0008168
Cla05g00857 819 Gene3D Vaccinia Virus protein VP39 424 568 IPR029063 -
Cla05g00857 819 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 91 176 IPR029063 -
Cla05g00857 819 PANTHER METHYLTRANSFERASE PMT15-RELATED 52 186 - -
Cla05g00857 819 PANTHER METHYLTRANSFERASE PMT15-RELATED 416 808 - -
Cla05g00857 819 Pfam Leucine rich repeat N-terminal domain 223 264 IPR013210 -
Cla05g00857 819 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 52 186 IPR004159 GO:0008168
Cla05g00857 819 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 416 808 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00857 - - - csv:101216405 778.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00857 Cla-Chr5:8496715 Cla07g01399 Cla-Chr7:31128770 2.70E-149 dispersed
Cla01g00118 Cla-Chr1:1076679 Cla05g00857 Cla-Chr5:8496715 9.76E-50 transposed
Cla10g00186 Cla-Chr10:2118906 Cla05g00857 Cla-Chr5:8496715 4.22E-42 transposed
Cla11g00878 Cla-Chr11:14663009 Cla05g00857 Cla-Chr5:8496715 1.19E-44 transposed
Cla05g00194 Cla-Chr5:1747984 Cla05g00857 Cla-Chr5:8496715 4.35E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g607 . . . . . . . Bma14g02088 Cmo16g00150 Cmo18g01254 . . . . Sed02g1606 . Cpe14g00121 Bhi01g01355 Tan01g0280 Cmetu06g0945 . Hepe07g0181 Mch10g0177 . . . . . . . . . . . . Lsi05g01255 . . Cme06g00973 . . . . . . . . . . . Cma16g00143 Cma18g01231 Car16g00124 Car18g01135 . . . . . . . . . Cla05g00857 Cam05g0943 Cec05g0948 Cco05g0948 Clacu05g0930 Cmu05g0888 Cre05g0973 . Csa03g01687 Chy06g00920 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002128 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 3 1 2 2 2 2 2 2 2 2 3 2 2 65