Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00859 ATGAAAAGCATCACAAATCCTGAACCACAGAGAGAAACAAAGAAAGCTAAGCGCGTGATGTGGAGAGTTCATAGAAGCGCGTTGGGAAGAAAGTGCTCACATCACAATTCCCATTTCCCAAATCCAACCTCACTTCTTCTTCTTCTTTTCTTCTTTTGCTTCTTCCCCGAATTAAAACTCTTACTCTCACTTTCTTCTCTTCTTCCGTTCTTTTCTCAGCCATGCCTTTACTTCTCTACCCCTCATTTTTCTAGCTTTCCACTTCCATTCATGGGCTTTCTCCGGCGACTTTTCCGTCCAAAAAAGCCCCCTCCCGACCCCCCGGACTCCACCCCAGACCCCAACAAGAAGAAAAACAAGCGGTGGAGCTTCCCCAAGTCCGCCCACAACCACCACTCTCGCCCTTACGCCACCCCCTCCCAACCCAATGCATTTGGCCCCTCCTCTTCCTACACCGAACCTCTCGATACCAACAAGCACGCGATTGCCGTAGCTGCCGCCACCGCCGCCGTTGCCGAGGCAGCTCTAGCCGCCGCCCATGCCGCTGCCGAAGTTGTTCGCCTCACCAGCAGCGGCACCACTCACACTAATGCTAACCGCCGTTGGATGGAGGAGGCGGCTGCCGTTAAAATCCAGTCCGCCTTTCGAGGTTATTTGGCAAGGAGGGCACTTAGGGCACTGAAGGCATTGGTAAAGCTTCAAGCTTTGGTGAGAGGTCACATTGTGAGAAAGCAAATGGCTGACATGCTAAGGCGAATGCAGACACTGGTTAGATTGCAATCTCGAGCTTGTGCTGGTCGTTCAAACTTATCGGATTCTTTGCATTCTACCAGCAAATCCTCGCTCTCTCATATCCGTGTCCAAGCAACCCCCAATGGAAATGAACATCAACTCTGTGGTCATCATAGTAATAAATTTGACAACTCTGCACTTCTAAAGAGATGTGGTTCGAATTCAAACTTGAAGGATGTAACTGTTGTGGATAGAGCACCAGTCAGGTCGAGTTGGTTAGACCGTTGGATGGAAGAAAACTTGTGGAACAATCGAGACTTGCCTCTGAAGAATATTCATGCAATAGATGAGAAAACAGACAAAATCCTTGAAGTAGATACATGGAAACCTCATTTGAAGTCTCAAGGAAACATCAGCAGCTTTAAGAACTCTCAAATGGCTCCGGACTTTAAAAACCACCAGAGCTTTATGACGATTGACTCCCCATCAAAACACTCGTCAAAGGCTGCAAATCCAGTTTCGAGTCTTTCCTCGGGGGAAGCGTCCTTGAGCTCCTTAAAATTCCCTGTTGGAAAATATGAAACAGCTCCAAGAACAGCAGAAAATAGCCCCCATGTGCATTCTGCTTCATCCAGGCGTGGAAATGGTGCAAAAAGAGCTACGTTGTCGCCGACAAGAAGTGAGTATGCATGGGGGTATTTCAGCGGCTATGCAGGTTATCCGAACTATATGGCCAACACAGAGTCGTCCAAAGCAAAAGTCAGGTCACAAAGTGCCCCGAAACAGAGGGTCGAGTTAGATAAATTCGGATCAAACAAGCGGTATGCTCAGGTATCTTGGGATGCATGGAGCTTTTCAAACAACGGTATCCCCCATGAACCCAATTCATCAAACAATGCCAATTCTGTAGCTGATCGCATGACTAAGTTTGCAAGTACCAAATCAAGATGA 1683 47.83 MKSITNPEPQRETKKAKRVMWRVHRSALGRKCSHHNSHFPNPTSLLLLLFFFCFFPELKLLLSLSSLLPFFSQPCLYFSTPHFSSFPLPFMGFLRRLFRPKKPPPDPPDSTPDPNKKKNKRWSFPKSAHNHHSRPYATPSQPNAFGPSSSYTEPLDTNKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGTTHTNANRRWMEEAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQMADMLRRMQTLVRLQSRACAGRSNLSDSLHSTSKSSLSHIRVQATPNGNEHQLCGHHSNKFDNSALLKRCGSNSNLKDVTVVDRAPVRSSWLDRWMEENLWNNRDLPLKNIHAIDEKTDKILEVDTWKPHLKSQGNISSFKNSQMAPDFKNHQSFMTIDSPSKHSSKAANPVSSLSSGEASLSSLKFPVGKYETAPRTAENSPHVHSASSRRGNGAKRATLSPTRSEYAWGYFSGYAGYPNYMANTESSKAKVRSQSAPKQRVELDKFGSNKRYAQVSWDAWSFSNNGIPHEPNSSNNANSVADRMTKFASTKSR 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8507408 8511481 + ClCG05G007880.2 Cla05g00859 272349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00859 560 MobiDBLite consensus disorder prediction 438 466 - -
Cla05g00859 560 ProSiteProfiles IQ motif profile. 204 232 IPR000048 GO:0005515
Cla05g00859 560 MobiDBLite consensus disorder prediction 534 560 - -
Cla05g00859 560 PANTHER CALMODULIN-BINDING PROTEIN 91 558 - -
Cla05g00859 560 MobiDBLite consensus disorder prediction 445 466 - -
Cla05g00859 560 Pfam IQ calmodulin-binding motif 228 245 IPR000048 GO:0005515
Cla05g00859 560 Pfam IQ calmodulin-binding motif 206 225 IPR000048 GO:0005515
Cla05g00859 560 Gene3D - 204 255 - -
Cla05g00859 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 250 IPR027417 -
Cla05g00859 560 ProSiteProfiles IQ motif profile. 228 255 IPR000048 GO:0005515
Cla05g00859 560 MobiDBLite consensus disorder prediction 133 151 - -
Cla05g00859 560 MobiDBLite consensus disorder prediction 101 151 - -
Cla05g00859 560 PANTHER IQ-DOMAIN 5-RELATED 91 558 - -
Cla05g00859 560 SMART iq_5 226 247 IPR000048 GO:0005515
Cla05g00859 560 SMART iq_5 203 225 IPR000048 GO:0005515
Cla05g00859 560 MobiDBLite consensus disorder prediction 404 423 - -
Cla05g00859 560 Pfam Protein of unknown function (DUF4005) 448 530 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00859 - - - csv:101216161 799.275
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00296 Cla05g00859 CCT
Cla01g00296 Cla05g00859 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00859 Cla-Chr5:8507408 Cla06g00255 Cla-Chr6:3189292 1.13E-20 dispersed
Cla07g01269 Cla-Chr7:29821836 Cla05g00859 Cla-Chr5:8507408 5.94E-24 dispersed
Cla09g00021 Cla-Chr9:269210 Cla05g00859 Cla-Chr5:8507408 2.82E-20 dispersed
Cla01g00296 Cla-Chr1:3090662 Cla05g00859 Cla-Chr5:8507408 1.77E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g612 . Blo15g00158 Bda05g00058 . Bpe03g00297 . . . Cmo16g00149 . . . . . Sed01g3916 . Cpe14g00120 Bhi01g01353 Tan01g0278 Cmetu09g1857 Lac11g2130 Hepe07g0179 Mch10g0175 . Cla01g00296 Cam01g0307 Cec01g0297 Cco01g0314 Clacu01g0307 Cmu01g0292 Cre09g2216 . . . . Lsi05g01253 Csa05g00319 Chy09g01189 Cme06g00975 . . Bda06g00672 . . . . . . . . Cma16g00142 . . . . . Bhi12g00208 . . Lac11g2130 Hepe06g1578 . Lcy12g1690 Cla05g00859 Cam05g0945 Cec05g0950 Cco05g0950 Clacu05g0932 Cmu05g0890 Cre05g0975 . Csa03g01689 Chy06g00922 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006767 3 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00859 Cla_Chr05 FPKM 1.617424 1.745018 1.246677 0.549479 1.390824 2.222277 2.271378 0.229598 0.170589 0.103906